WormBase Tree Display for Variation: WBVar00143954
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WBVar00143954 | Evidence | Paper_evidence | WBPaper00025237 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | e1377 | |||||||
Other_name | CE38955:p.Trp149Ter | ||||||||
F31F6.5.1:c.446G>A | |||||||||
HGVSg | CHROMOSOME_X:g.14889428G>A | ||||||||
Sequence_details | SMap | S_parent | Sequence | F31F6 | |||||
Flanking_sequences | attttcaggatctatgcctgagctacgatt | ggtttgcggagccaacgagcatatccaaat | |||||||
Mapping_target | F31F6 | ||||||||
Type_of_mutation | Substitution | g | a | ||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00004313 | ||||||||
WBStrain00004378 | |||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects (3) | |||||||||
Genetics | Interpolated_map_position | X | 21.4994 | ||||||
Mapping_data | In_2_point | 283 | |||||||
419 | |||||||||
420 | |||||||||
421 | |||||||||
In_multi_point | 649 | ||||||||
In_pos_neg_data | 2161 | ||||||||
2169 | |||||||||
2228 | |||||||||
Description | Phenotype | WBPhenotype:0000013 | Paper_evidence | WBPaper00000316 | |||||
WBPaper00000504 | |||||||||
WBPaper00000503 | |||||||||
Person_evidence | WBPerson261 | ||||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Will not form Dauers upon starved plates or in liquid culture. | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
defective dauer formation | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000150 | Paper_evidence | WBPaper00000503 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000247 | Paper_evidence | WBPaper00000503 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | 1/30 L2 larva, 3/30 adults move to within 1 cm of the center of a 50mM Na+ gradient in an orientation assay. Whereas 25/28 L2 N2 larva and 28/30 N2 adults move to within 1 cm of the center in the same assay. | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Life_stage | WBls:0000027 | PATO:0000460 | Paper_evidence | WBPaper00000503 | ||||
Curator_confirmed | WBPerson712 | ||||||||
WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000249 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | defective osmotic avoidance | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000254 | Paper_evidence | WBPaper00000503 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000503 | ||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000256 | Paper_evidence | WBPaper00000503 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Amphid sheath cells are enlarged and there is an accumulation of large vesicles. | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Life_stage | WBls:0000027 | PATO:0000460 | Paper_evidence | WBPaper00000503 | ||||
Curator_confirmed | WBPerson712 | ||||||||
WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000300 | Paper_evidence | WBPaper00000503 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Vesicles accumulate in the sheath cells. | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Life_stage | WBls:0000027 | PATO:0000460 | Paper_evidence | WBPaper00000503 | ||||
Curator_confirmed | WBPerson712 | ||||||||
WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000604 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | abnormal sensory anatomy especially amphidial sheath cells (resembles Che-14) | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006754 | PATO:0000460 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000637 | Paper_evidence | WBPaper00000932 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Defective response to dauer inducing conditions as assayed by SDS resistance of animals from a starved, crowded plate. | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000663 | Paper_evidence | WBPaper00000503 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000843 | Paper_evidence | WBPaper00000503 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Male mating efficiency is reduced to 30% that of WT. | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001084 | Paper_evidence | WBPaper00000932 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Defective response to dilute NaCl gradient. | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001414 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | poor male mating | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001418 | Paper_evidence | WBPaper00044578 | |||||||
Curator_confirmed | WBPerson12259 | ||||||||
Remark | Figure 5B | Paper_evidence | WBPaper00044578 | ||||||
Curator_confirmed | WBPerson12259 | ||||||||
WBPhenotype:0001434 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | abnormal chemotaxis | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001528 | Paper_evidence | WBPaper00000932 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Socket and sheath channels do not join. | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001533 | Paper_evidence | WBPaper00000503 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Lateral outer labial neurons were missing in L2 and OL tips were missing in adults | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Life_stage | WBls:0000027 | PATO:0000460 | Paper_evidence | WBPaper00000503 | ||||
Curator_confirmed | WBPerson712 | ||||||||
WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00000503 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001692 | Paper_evidence | WBPaper00002589 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Animals did not display the L2 M37 epitope to the same extent as wildtype when grown in the presence of pheromone, e.g. animals were ILD defective. | Paper_evidence | WBPaper00002589 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0002535 | Paper_evidence | WBPaper00002087 | |||||||
WBPaper00000932 | |||||||||
Person_evidence | WBPerson261 | ||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson712 | |||||||||
Remark | Defects in dye filling. | Paper_evidence | WBPaper00002087 | ||||||
Curator_confirmed | WBPerson48 | ||||||||
FITC rarely if ever stains amphids or phasmids. | Paper_evidence | WBPaper00000932 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Dyf, no FITC uptake by amphids or phasmids | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Recessive | Paper_evidence | WBPaper00002087 | |||||||
Curator_confirmed | WBPerson48 | ||||||||
Ease_of_scoring | ES1_Very_hard_to_score | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_not_observed | WBPhenotype:0000315 | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000398 | Paper_evidence | WBPaper00000503 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000478 | Paper_evidence | WBPaper00000932 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000505 | Paper_evidence | WBPaper00000932 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | No FITC staining of ray sensilla. | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000843 | Paper_evidence | WBPaper00000932 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Mating efficiency 4; 30-100% of WT mating efficiency. | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Life_stage | WBls:0000056 | PATO:0000460 | Paper_evidence | WBPaper00000932 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Genotype | him-5(e1490) | Paper_evidence | WBPaper00000932 | |||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001438 | Paper_evidence | WBPaper00001786 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00001786 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001530 | Paper_evidence | WBPaper00000932 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | No FITC staining of CEP. | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001535 | Paper_evidence | WBPaper00000932 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | No FITC staining of ADE or PDE. | Paper_evidence | WBPaper00000932 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Reference (17) | |||||||||
Method | Substitution_allele |