WormBase Tree Display for Variation: WBVar00089524
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WBVar00089524 | Evidence | Paper_evidence | WBPaper00005774 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | n477 | |||||||
Sequence_details | SMap | S_parent | Sequence | F55A8 | |||||
Flanking_sequences | gtcgacgacttccgagaggagtttgcacag | ctgaaaaatgtgaagaggctagcgacactt | |||||||
Mapping_target | F55A8 | ||||||||
Type_of_mutation | Insertion | ||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00026778 | ||||||||
Laboratory | MT | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00001173 | |||||||
Transcript | F55A8.2g.1 | ||||||||
F55A8.2d.1 | |||||||||
F55A8.2e.1 | |||||||||
F55A8.2f.1 | |||||||||
F55A8.2b.1 | |||||||||
F55A8.2c.1 | |||||||||
F55A8.2a.2 | |||||||||
F55A8.2h.1 | |||||||||
F55A8.2a.1 | |||||||||
Interactor | WBInteraction000500289 | ||||||||
Genetics | Interpolated_map_position | IV | -14.2686 | ||||||
Description | Phenotype | WBPhenotype:0000006 | Paper_evidence | WBPaper00000635 | |||||
Curator_confirmed | WBPerson48 | ||||||||
WBPhenotype:0000022 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 mutants have increased body length | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000130 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | All alleles of egl-4 exhibit hypersensitivity to dauer pheromone | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Temperature | 25C | Paper_evidence | WBPaper00004310 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000227 | Paper_evidence | WBPaper00061691 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | "...egl-4 loss-of-function mutant males were defective in their turning behavior and frequently became detached from the hermaphrodite while attempting turns. Quantification of this defect revealed that, compared to those performed by wild-type males, many more of the attempted turns made by egl-4 mutant males were aberrant." | Paper_evidence | WBPaper00061691 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000294 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 mutants have dark intestines (Din) | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000303 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 mutants fail to respond to all concentrations of diacetyl tested | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Affected_by | Molecule | WBMol:00002819 | Paper_evidence | WBPaper00004310 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000304 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 alleles exhibit weaker but significant defects in the response to isoamyl alcohol | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Affected_by | Molecule | WBMol:00001063 | Paper_evidence | WBPaper00004310 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000480 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 alleles exhibit weaker but significant defects in the response to pyrazine | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Affected_by | Molecule | WBMol:00005360 | Paper_evidence | WBPaper00004310 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000545 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 mutants retain approximately three times as many eggs as wild-type adults | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00004310 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000639 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 alleles exhibit a Daf-c phenotype to varying degrees at 27C | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Temperature | 27C | Paper_evidence | WBPaper00004310 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000662 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Mutants have foraging defects (data not shown) | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001084 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 mutants have strong defects in the response to NaCl | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Affected_by | Molecule | WBMol:00003571 | Paper_evidence | WBPaper00004310 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001085 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 alleles exhibit weaker but significant defects in the response to butanone | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Affected_by | Molecule | WBMol:00005086 | Paper_evidence | WBPaper00004310 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001414 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Mutants have male mating defects (data not shown) | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001483 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 mutants lay eggs at a later developmental stage, likely as a consequence of delayed active egg-laying periods | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00004310 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001500 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 mutants have strong defects in the response to 2,3-pentanedione | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Affected_by | Molecule | WBMol:00001715 | Paper_evidence | WBPaper00004310 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001524 | Paper_evidence | WBPaper00035944 | |||||||
Curator_confirmed | WBPerson2776 | ||||||||
WBPerson10038 | |||||||||
Remark | Quoted from paper: "However egl-4 mutants still went into quiescence albeit for a shorter duration in 0.01 mM aldicarb. Taken together these data suggest that increased quiescent bout durations in liquid due to increased cholinergic activity require egl-4 function." | Paper_evidence | WBPaper00035944 | ||||||
Curator_confirmed | WBPerson10038 | ||||||||
WBPhenotype:0001565 | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | egl-4 mutants have strong defects in the response to lysine | Paper_evidence | WBPaper00004310 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00004310 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001624 | Paper_evidence | WBPaper00061691 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | "...induction of tail curling by exogenous serotonin was less efficient in egl-4 mutant males than in wild type." | Paper_evidence | WBPaper00061691 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0002114 | Paper_evidence | WBPaper00035944 | |||||||
Curator_confirmed | WBPerson2776 | ||||||||
Phenotype_not_observed (9) | |||||||||
Reference | WBPaper00004310 | ||||||||
WBPaper00010745 | |||||||||
WBPaper00000635 | |||||||||
WBPaper00017625 | |||||||||
WBPaper00010687 | |||||||||
WBPaper00011220 | |||||||||
WBPaper00023070 | |||||||||
WBPaper00035944 | |||||||||
WBPaper00018461 | |||||||||
WBPaper00061691 | |||||||||
Remark | Flanking sequences are based on 30 bp to the left and right of V464 and T465 | Curator_confirmed | WBPerson1845 | ||||||
n477 has an eight-base pair insertion between V464 and T465, which causes a frameshift and a stop codon and leads to loss of the kinase domain | Paper_evidence | WBPaper00005774 | |||||||
Method | Insertion_allele |