Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00089478

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00089478EvidencePerson_evidenceWBPerson27644
NamePublic_namen389
Sequence_detailsSMapS_parentSequenceZC247
Flanking_sequencescactgtgctcggaaaatgctggcatcagtcttgaacatttctaattctaaatattatagt
Mapping_targetZC247
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeAllele
Origin (4)
AffectsGeneWBGene00013859
WBGene00201104
WBGene00013860
WBGene00003000
TranscriptZC247.3.1
ZC247.2.1
ZC247.1.1
ZC247.6
Interactor (16)
GeneticsInterpolated_map_positionI4.79669
Mapping_dataIn_2_point3202
In_multi_point402
403
In_pos_neg_data748
756
765
DescriptionPhenotypeWBPhenotype:0000006Paper_evidenceWBPaper00000762
WBPaper00005357
Curator_confirmedWBPerson2021
WBPerson2987
Remark"We next analyzed the ability of individual lin-11-A and lin-11-B element to rescue the egg-laying defect of lin-11(n389) animals."Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
PenetranceCompletePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Range100100Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
RecessivePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
EQ_annotationsLife_stageWBls:0000057PATO:0000460Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
WBPhenotype:0000093Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remark2ary vulval cell lineages become symmetricalPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
PenetranceComplete100%Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000393Paper_evidenceWBPaper00041660
Curator_confirmedWBPerson712
RemarkACs fail to migrate and are located on the vulval apex in most animals.Paper_evidenceWBPaper00041660
Curator_confirmedWBPerson712
PenetranceCompletePaper_evidenceWBPaper00041660
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0004522PATO:0000460Paper_evidenceWBPaper00041660
Curator_confirmedWBPerson712
WBPhenotype:0000414Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
RemarkThe AWA neurons adopt partial AWC-like fate in lin-11 mutants. 12% of lin-11(n389) mutants ectopically express tax-2::GFP in at least one AWA neuron. lin-11 mutants express str-2::GFP ectopically in at least one AWA neuron. Few lin-11(n389) mutant animals express str-2::GFP in ASGPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
EQ_annotationsAnatomy_termWBbt:0005670PATO:0000460Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
WBbt:0005664PATO:0000460Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Phenotype_assayGenotypekyIs111 (tax-2::GFP), kyIs140 (str-2::GFP)Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
WBPhenotype:0000425Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Remarklin-11(n389) alters odr-7 expression in AWAPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
EQ_annotationsAnatomy_termWBbt:0005670PATO:0000460Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Life_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Phenotype_assayTreatmentODR-7 antibody stainingPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
WBPhenotype:0000510Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
Remark"By contrast, lin-11(n389) animals have abnormal vulval invagination and no visible utse (Fig. 3C) and anchor cell (AC) remains located on the vulval apex causing a physical block in the egg-laying passage (Newman et al., 1999; Fig. 3C)."Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
EQ_annotationsAnatomy_termWBbt:0006748PATO:0000460Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
WBPhenotype:0000533Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
Remark"By contrast, lin-11(n389) animals have abnormal vulval invagination and no visible utse (Fig. 3C) and anchor cell (AC) remains located on the vulval apex causing a physical block in the egg-laying passage (Newman et al., 1999; Fig. 3C)."Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
EQ_annotationsAnatomy_termWBbt:0006789PATO:0000460Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
WBPhenotype:0000594Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
Remark"Furthermore, cog-2::GFP expression reveals defects in the migration of π progeny (Fig. 3D)."Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
EQ_annotationsAnatomy_termWBbt:0007813PATO:0000460Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
Phenotype_assayGenotypecog-2::GFPPaper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
WBPhenotype:0000643Paper_evidenceWBPaper00000762
Person_evidenceWBPerson261
Curator_confirmedWBPerson2021
WBPerson712
Remarkhermaphrodite slightly uncoordinated; adult male slightly uncoordinatedPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
PenetranceComplete100%Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RecessivePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
EQ_annotationsLife_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
WBls:0000057PATO:0000460Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBls:0000056PATO:0000460Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000698Paper_evidenceWBPaper00000762
Person_evidenceWBPerson261
Curator_confirmedWBPerson2021
WBPerson712
Remark97 percent of Vul hermaphrodites have a single ventral protrusionPaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
adult hermaphrodite vulvaless (penetrance 100%)Person_evidenceWBPerson261
Curator_confirmedWBPerson712
PenetranceCompletePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
100%Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Range100100Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
RecessivePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
EQ_annotationsLife_stageWBls:0000057PATO:0000460Paper_evidenceWBPaper00000762
Person_evidenceWBPerson261
Curator_confirmedWBPerson2021
WBPerson712
Phenotype_assayTemperature20Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
WBPhenotype:0000699Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
Remark"The ectopic vulval invagination defect of lin-17(sy277) animals was completely suppressed by lin-11(n389) (n = 300; Table 1)."Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
WBPhenotype:0000717Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Remarklin-11(n389) alters odr-7, gpa-5 and odr-10 expression in AWAPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
EQ_annotationsAnatomy_termWBbt:0005670PATO:0000460Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Life_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
WBls:0000024PATO:0000460Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Phenotype_assayGenotypepkIs582 (gpa-5::GFP), kyIs37 (odr-10::GFP), odr-7::GFPPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
WBPhenotype:0001414Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Remarkmale mating is completely abolishedPaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
PenetranceHighPaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
RecessivePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
EQ_annotationsLife_stageWBls:0000056PATO:0000460Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Phenotype_assayGenotypehim-5(e1467)Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
WBPhenotype:0001508Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
Remark"By contrast, lin-11(n389) animals have abnormal vulval invagination and no visible utse (Fig. 3C) and anchor cell (AC) remains located on the vulval apex causing a physical block in the egg-laying passage (Newman et al., 1999; Fig. 3C)."Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
EQ_annotationsAnatomy_termWBbt:0004522PATO:0000460Paper_evidenceWBPaper00005357
Curator_confirmedWBPerson2987
WBPhenotype:0001510Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
RemarkLoss of ASG-specific gene expression in lin-11 mutantsPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
EQ_annotationsAnatomy_termWBbt:0005664PATO:0000460Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Phenotype_assayGenotypeops-1::GFP, Ex[unc-30::GFP], lim-6::GFPPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
WBPhenotype:0001526Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
RemarkIn lin-11 mutants, the cilia of the AWA neurons acquire a morphology intermediate between those of AWA and AWCPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
EQ_annotationsAnatomy_termWBbt:0005670PATO:0000460Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Phenotype_not_observedWBPhenotype:0000717Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Remarklin-11 mutants do not exhibit gene expression defects in ASH, ADL, ADF, ASER, ASEL, AWB, ASI, AFD and AVAPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Phenotype_assayGenotypentIs1 (gcy-5::GFP), oyIs17 (gcy-8::GFP), kyIs128 (str-3::GFP), kyIs104 (str-1::GFP), oyIs14 (sra-6::GFP), otIs24 (sre-1::GFP), oyIs34 (T08G3.3::GFP), kyIs5 (ceh-23::GFP), kyIs29 (glr-1::GFP), lim-6p::GFP and gmIs12 (srb-6::GFP)Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
WBPhenotype:0001660Paper_evidenceWBPaper00006052
Curator_confirmedWBPerson2021
RemarkNo disruption of ASE asymmetry (as seen with gcy-7 reporters)Paper_evidenceWBPaper00006052
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00006052
Curator_confirmedWBPerson2021
Phenotype_assayGenotypeotIs3Paper_evidenceWBPaper00006052
Curator_confirmedWBPerson2021
WBPhenotype:0001765Paper_evidenceWBPaper00031936
Curator_confirmedWBPerson2021
RemarkMutants respond normally to CO2Paper_evidenceWBPaper00031936
Curator_confirmedWBPerson2021
EQ_annotationsLife_stageWBls:0000057PATO:0000460Paper_evidenceWBPaper00031936
Curator_confirmedWBPerson2021
Phenotype_assayTreatment10% CO2Paper_evidenceWBPaper00031936
Curator_confirmedWBPerson2021
WBPhenotype:0002535Paper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Remarklin-11 mutants do not exhibit defects in DiI fillingPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Phenotype_assayTreatmentDiI fillingPaper_evidenceWBPaper00004906
Curator_confirmedWBPerson2021
Reference (11)
RemarkDeletion also affects two adjacent genes ZC247.1 and ZC247.2Person_evidenceWBPerson27644
Curator_confirmedWBPerson51134
Variation information submitted by WBPerson27644 on 2023-05-31_19:01:43 via the Allele submission form.Curator_confirmedWBPerson51134
MethodDeletion_allele