WormBase Tree Display for Variation: WBVar01786826
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WBVar01786826 | Name | Public_name | WBVar01786826 | |||||
---|---|---|---|---|---|---|---|---|
Other_name (11) | ||||||||
HGVSg | CHROMOSOME_X:g.3556217C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | F56B6 | ||||
Flanking_sequences | ATTTCTGTAGTCACAGTTATTCTGACAATG | TGTCCGTCACCTACCCAATGATTGCAAAAA | ||||||
Mapping_target | F56B6 | |||||||
Source_location | 225 | CHROMOSOME_X | 3556204 | 3556204 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | C | T | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00004350 | ||||||
Transcript | F56B6.2g.1 | VEP_consequence | synonymous_variant | |||||
VEP_impact | LOW | |||||||
HGVSc | F56B6.2g.1:c.4C>T | |||||||
HGVSp | CE42124:p.Leu2= | |||||||
cDNA_position | 112 | |||||||
CDS_position | 4 | |||||||
Protein_position | 2 | |||||||
Exon_number | 2/7 | |||||||
Codon_change | Ctg/Ttg | |||||||
Amino_acid_change | L | |||||||
F56B6.2e.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56B6.2e.1:c.453-223C>T | |||||||
Intron_number | 3/7 | |||||||
F56B6.2i.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56B6.2i.1:c.1944-223C>T | |||||||
Intron_number | 12/16 | |||||||
F56B6.2a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56B6.2a.1:c.1938-223C>T | |||||||
Intron_number | 12/16 | |||||||
F56B6.2h.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56B6.2h.1:c.1953-223C>T | |||||||
Intron_number | 12/16 | |||||||
F56B6.2c.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56B6.2c.1:c.753-223C>T | |||||||
Intron_number | 6/9 | |||||||
F56B6.2j.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56B6.2j.1:c.1947-223C>T | |||||||
Intron_number | 11/14 | |||||||
F56B6.2f.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56B6.2f.1:c.200+112C>T | |||||||
Intron_number | 2/6 | |||||||
F56B6.2b.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56B6.2b.1:c.1827-223C>T | |||||||
Intron_number | 11/15 | |||||||
Method | WGS_Flibotte |