WormBase Tree Display for Variation: WBVar00241238

WBVar00241238 Evidence: Paper_evidence: WBPaper00006240
  Name: Public_name: qm30
    Other_name: qm30tsmat
    HGVSg: CHROMOSOME_III:g.5278938_5279527del
  Sequence_details: SMap: S_parent: Sequence: ZC395
    Flanking_sequences: acaagattacgtgatgaggagcttcatcat aacttctgatgatgaccagaactttttttc
    Mapping_target: ZC395
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin (4)
  Affects: Gene: WBGene00000536
    Transcript: ZC395.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 454-?
        CDS_position: 454-?
        Protein_position: 152-?
        Intron_number: 4/5
        Exon_number: 4-6/6
    Interactor: WBInteraction000500522
      WBInteraction000500523
      WBInteraction000500524
      WBInteraction000500525
      WBInteraction000500526
      WBInteraction000500527
      WBInteraction000500528
      WBInteraction000500529
      WBInteraction000500530
      WBInteraction000517492
      WBInteraction000518773
      WBInteraction000520261
      WBInteraction000520262
      WBInteraction000520263
      WBInteraction000520264
      WBInteraction000520265
      WBInteraction000520266
      WBInteraction000520267
      WBInteraction000520268
      WBInteraction000520269
      WBInteraction000520270
      WBInteraction000520271
      WBInteraction000520272
      WBInteraction000520273
      WBInteraction000520274
      WBInteraction000520275
      WBInteraction000520276
      WBInteraction000520277
      WBInteraction000520278
      WBInteraction000520279
      WBInteraction000520280
      WBInteraction000520281
      WBInteraction000520282
      WBInteraction000520283
      WBInteraction000520284
      WBInteraction000520285
      WBInteraction000520707
      WBInteraction000520708
      WBInteraction000520727
      WBInteraction000525028
      WBInteraction000534733
      WBInteraction000534734
      WBInteraction000534735
      WBInteraction000534736
      WBInteraction000534737
      WBInteraction000534738
      WBInteraction000534739
      WBInteraction000534740
      WBInteraction000534741
      WBInteraction000534742
      WBInteraction000534743
      WBInteraction000534744
      WBInteraction000534745
      WBInteraction000535966
      WBInteraction000535968
      WBInteraction000535970
      WBInteraction000535972
      WBInteraction000535975
      WBInteraction000535979
      WBInteraction000535980
      WBInteraction000535982
      WBInteraction000537384
      WBInteraction000537430
      WBInteraction000537431
      WBInteraction000537432
      WBInteraction000537433
      WBInteraction000537434
      WBInteraction000537435
      WBInteraction000541823
  Genetics: Interpolated_map_position: III -1.84661
  Description: Phenotype (25)
    Phenotype_not_observed: WBPhenotype:0000114 Paper_evidence: WBPaper00046786
        Curator_confirmed: WBPerson2987
        Remark: clk-1(qm30) does not affect mRNA levels of the gene hsp-4 Paper_evidence: WBPaper00046786
            Curator_confirmed: WBPerson2987
      WBPhenotype:0000246 Paper_evidence: WBPaper00031896
        Curator_confirmed: WBPerson712
        Remark: Although animals exhibited an extended mean time between execution of the defecation motor program, the variance between DMP activation was not significantly different from wild-type. Paper_evidence: WBPaper00031896
            Curator_confirmed: WBPerson712
      WBPhenotype:0001574 Paper_evidence: WBPaper00036073
        Curator_confirmed: WBPerson712
        Remark: ATP levels are normal, with a trend towards and increase, despite decreased mitochondrial function. Paper_evidence: WBPaper00036073
            Curator_confirmed: WBPerson712
        Maternal: With_maternal_effect: Paper_evidence: WBPaper00036073
            Curator_confirmed: WBPerson712
      WBPhenotype:0002087 Paper_evidence: WBPaper00031326
        Curator_confirmed: WBPerson2857
        Remark: growth in hydrogen sulfide enhances thermotolerance relative to untreated animals Paper_evidence: WBPaper00031326
            Curator_confirmed: WBPerson2857
  Reference (30)
  Method: Deletion_allele