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WormBase Tree Display for Variation: WBVar00089659

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Name Class

WBVar00089659EvidencePaper_evidenceWBPaper00002543
NamePublic_namen671
Other_nameY71F9B.5a.2:c.1345C>T
Y71F9B.5a.1:c.1345C>T
Y71F9B.5b.1:c.1345C>T
CE50007:p.Gln381Ter
CE28810:p.Gln449Ter
CE25569:p.Gln449Ter
Y71F9B.5c.1:c.1141C>T
HGVSgCHROMOSOME_I:g.2714848C>T
Sequence_detailsSMapS_parentSequenceY71F9B
Flanking_sequencestgtcaatgctataaattcatgattctcaccaatggacccgaatgacaattgactgtaaac
Mapping_targetY71F9B
Type_of_mutationSubstitutionctPaper_evidenceWBPaper00002543
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00008499
WBStrain00008500
WBStrain00008502
WBStrain00024033
WBStrain00026829
WBStrain00026967
WBStrain00027093
WBStrain00027149
LaboratoryMT
StatusLive
AffectsGeneWBGene00003006
TranscriptY71F9B.5c.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScY71F9B.5c.1:c.1141C>T
HGVSpCE50007:p.Gln381Ter
cDNA_position1141
CDS_position1141
Protein_position381
Exon_number6/7
Codon_changeCaa/Taa
Amino_acid_changeQ/*
Y71F9B.5a.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScY71F9B.5a.1:c.1345C>T
HGVSpCE25569:p.Gln449Ter
cDNA_position1375
CDS_position1345
Protein_position449
Exon_number9/11
Codon_changeCaa/Taa
Amino_acid_changeQ/*
Y71F9B.5b.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScY71F9B.5b.1:c.1345C>T
HGVSpCE28810:p.Gln449Ter
cDNA_position1376
CDS_position1345
Protein_position449
Exon_number9/11
Codon_changeCaa/Taa
Amino_acid_changeQ/*
Y71F9B.5a.2VEP_consequencestop_gained
VEP_impactHIGH
HGVScY71F9B.5a.2:c.1345C>T
HGVSpCE25569:p.Gln449Ter
cDNA_position1672
CDS_position1345
Protein_position449
Exon_number10/12
Codon_changeCaa/Taa
Amino_acid_changeQ/*
InteractorWBInteraction000000672
WBInteraction000001263
WBInteraction000051865
WBInteraction000500066
WBInteraction000500469
WBInteraction000500470
WBInteraction000500471
WBInteraction000500477
WBInteraction000500478
WBInteraction000500479
WBInteraction000500480
WBInteraction000500486
WBInteraction000500487
WBInteraction000500488
WBInteraction000500490
WBInteraction000500491
WBInteraction000500492
WBInteraction000500493
WBInteraction000500497
WBInteraction000500504
WBInteraction000501654
WBInteraction000501787
WBInteraction000502029
WBInteraction000502366
WBInteraction000502752
WBInteraction000502821
WBInteraction000502823
WBInteraction000503516
WBInteraction000503761
WBInteraction000518384
WBInteraction000524004
WBInteraction000524130
WBInteraction000524140
WBInteraction000524389
WBInteraction000534753
WBInteraction000535540
WBInteraction000535553
WBInteraction000535554
WBInteraction000535565
WBInteraction000535566
WBInteraction000535567
WBInteraction000535568
WBInteraction000535570
WBInteraction000535571
WBInteraction000535572
WBInteraction000535573
WBInteraction000535574
WBInteraction000538571
WBInteraction000538572
WBInteraction000538574
WBInteraction000538590
WBInteraction000538607
WBInteraction000538615
WBInteraction000538616
WBInteraction000538617
WBInteraction000538620
WBInteraction000538622
WBInteraction000538623
WBInteraction000542020
WBInteraction000542292
WBInteraction000542293
WBInteraction000563364
WBInteraction000563365
WBInteraction000563366
WBInteraction000563367
WBInteraction000563368
WBInteraction000563369
WBInteraction000563374
WBInteraction000563378
WBInteraction000563379
WBInteraction000563380
WBInteraction000563410
WBInteraction000563411
WBInteraction000563412
WBInteraction000563413
WBInteraction000563415
GeneticsInterpolated_map_positionI-7.32074
Mapping_dataIn_2_point3196
7005
7006
In_multi_point414
1044
1045
1050
2206
2207
3030
3200
3435
In_pos_neg_data4081
4354
5696
6234
6577
6630
6640
Description (2)
Reference (36)
MethodSubstitution_allele