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WormBase Tree Display for Variation: WBVar00142975

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Name Class

WBVar00142975EvidencePaper_evidenceWBPaper00003757
NamePublic_namee120
Other_nameF26C11.2.1:c.597+1G>A
HGVSgCHROMOSOME_II:g.9898071C>T
Sequence_detailsSMapS_parentSequenceF26C11
Flanking_sequencescgaccaaatgcgaaatatcccagggttcagtaatttgtttcgtatagtttttcgacaaatt
Mapping_targetF26C11
Type_of_mutationSubstitutionga
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (254)
LaboratoryCB
StatusLive
AffectsGeneWBGene00006744
TranscriptF26C11.2.1VEP_consequencesplice_donor_variant
VEP_impactHIGH
HGVScF26C11.2.1:c.597+1G>A
Intron_number6/7
InteractorWBInteraction000501675
WBInteraction000501677
WBInteraction000502817
WBInteraction000518430
WBInteraction000518431
WBInteraction000541783
WBInteraction000556939
WBInteraction000556945
WBInteraction000556946
WBInteraction000556949
WBInteraction000556952
WBInteraction000556955
WBInteraction000556956
WBInteraction000556959
WBInteraction000556962
WBInteraction000556964
GeneticsInterpolated_map_positionII1.76951
Mapping_dataIn_2_point (49)
In_multi_point (159)
In_pos_neg_data (22)
Marked_rearrangementmIn1[unc-4(e120) dpy-10(e128)]
mIn1[unc-4(e120)]
DescriptionPhenotypeWBPhenotype:0000164Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0000319Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES3_Easy_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000324Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0000352Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkMoves forward well but cannot back.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000643Paper_evidenceWBPaper00000031
Curator_confirmedWBPerson48
WBPhenotype:0001510Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkVentral cord VA motoneurons have normal anatomy but most have synaptic inputs appropriate to VB motoneurons.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0005339PATO:0000460Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001639Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0001716Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002134Paper_evidenceWBPaper00039982
Curator_confirmedWBPerson712
Remarkunc-4(e120) mutant animals escaped less frequently from constricting ring traps of Drechslerella spp.: D. dactyloides than wild-type animals.Paper_evidenceWBPaper00039982
Curator_confirmedWBPerson712
WBPhenotype:0002284Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002288Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002293Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002294Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002300Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002301Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002308Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002312Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002323Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002336Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002344Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002347Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002514Paper_evidenceWBPaper00001826
Curator_confirmedWBPerson48777
RemarkTable 2. All match full Unc-4 null movement phenotypePaper_evidenceWBPaper00001826
Curator_confirmedWBPerson48777
WBPhenotype:0004022Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0004023Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
Phenotype_not_observedWBPhenotype:0000641Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkHealthy, active.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001426Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
Phenotype_assayGenotypearIs37Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
WBPhenotype:0001645Paper_evidenceWBPaper00040284
Curator_confirmedWBPerson2987
RemarkTable S2Paper_evidenceWBPaper00040284
Curator_confirmedWBPerson2987
ReferenceWBPaper00001502
WBPaper00039982
WBPaper00040284
WBPaper00040262
WBPaper00043908
WBPaper00029020
WBPaper00000031
WBPaper00010445
WBPaper00022514
WBPaper00023402
WBPaper00004883
WBPaper00012694
WBPaper00011060
WBPaper00003998
WBPaper00015132
WBPaper00020813
WBPaper00014501
WBPaper00014296
WBPaper00016533
WBPaper00014440
WBPaper00016150
WBPaper00015940
WBPaper00015529
WBPaper00015530
WBPaper00013780
WBPaper00016593
WBPaper00014830
WBPaper00011765
WBPaper00022498
WBPaper00024161
WBPaper00012591
WBPaper00015277
WBPaper00011777
WBPaper00022296
WBPaper00016421
WBPaper00013923
WBPaper00014042
WBPaper00014181
WBPaper00016535
WBPaper00014111
WBPaper00022197
WBPaper00018570
WBPaper00016685
WBPaper00017118
WBPaper00016532
WBPaper00015263
WBPaper00016423
WBPaper00016548
WBPaper00016399
WBPaper00019566
WBPaper00015881
WBPaper00001826
WBPaper00061034
WBPaper00061175
RemarkManually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00006744 Donor
Variation stub/paper connection generated from the May 2021 NN VFP dataset.
Created by WBPerson51134 from the NN_VFP_triage_pipeline
MethodSubstitution_allele