WormBase Tree Display for Variation: WBVar00165319
expand all nodes | collapse all nodes | view schema
WBVar00165319 | Name | Public_name | WBVar00165319 | |||
---|---|---|---|---|---|---|
Other_name | snp_F45C12[1] | |||||
haw18569 | ||||||
cewivar00178143 | ||||||
CE11398:p.His169Gln | ||||||
F58E1.14.1:c.507T>A | ||||||
HGVSg | CHROMOSOME_II:g.1702897A>T | |||||
Sequence_details | SMap | S_parent | Sequence | F45C12 | ||
Flanking_sequences | attggcgtagactgaacttttttat | tgttgaaatgcggagtagagctcga | ||||
Mapping_target | F45C12 | |||||
Type_of_mutation | Substitution | A | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | |||
WGS_De_Bono | ||||||
WGS_Hawaiian_Waterston | ||||||
Million_mutation_project_reanalysis | ||||||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | ||||
Laboratory | RW | |||||
AX | ||||||
Person | WBPerson1562 | |||||
Analysis | WGS_Hawaiian_Waterston | |||||
WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | ||||||
SNP_Wicks | ||||||
History | Acquires_merge | WBVar00244807 | ||||
WBVar01361263 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00019045 | ||||
Transcript | F58E1.14.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0.34 | tolerated_low_confidence | ||||
PolyPhen | 0.006 | benign | ||||
HGVSc | F58E1.14.1:c.507T>A | |||||
HGVSp | CE11398:p.His169Gln | |||||
cDNA_position | 507 | |||||
CDS_position | 507 | |||||
Protein_position | 169 | |||||
Exon_number | 2/3 | |||||
Codon_change | caT/caA | |||||
Amino_acid_change | H/Q | |||||
Reference | WBPaper00004703 | |||||
WBPaper00037807 | ||||||
Remark | [20081124 db] this Variation was previously named hw18569 | |||||
Method | WGS_Hawaiian_Waterston |