WormBase Tree Display for Variation: WBVar00089625

WBVar00089625 Evidence: Paper_evidence: WBPaper00005774
  Name: Public_name: n612
    Other_name (16)
    HGVSg: CHROMOSOME_IV:g.1877300G>A
  Sequence_details: SMap: S_parent: Sequence: F55A8
    Flanking_sequences: acgattacaccgcccgtttctacgtggcct cgtgctcgagggtctcgaatatctgcatcg
    Mapping_target: F55A8
    Type_of_mutation: Substitution: g a Paper_evidence: WBPaper00005774
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00026828
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00001173
    Transcript: F55A8.2g.1 (12)
      F55A8.2e.1 (12)
      F55A8.2d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F55A8.2d.1:c.493-2544G>A
        Intron_number: 3/3
      F55A8.2f.1 (12)
      F55A8.2b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        SIFT: 0 deleterious
        PolyPhen: 1 probably_damaging
        HGVSc: F55A8.2b.1:c.1598G>A
        HGVSp: CE19898:p.Cys533Tyr
        cDNA_position: 1598
        CDS_position: 1598
        Protein_position: 533
        Exon_number: 9/10
        Codon_change: tGc/tAc
        Amino_acid_change: C/Y
      F55A8.2c.1 (12)
      F55A8.2h.1 (12)
      F55A8.2a.2 (12)
      F55A8.2a.1 (12)
  Genetics: Interpolated_map_position: IV -14.2332
  Description (2)
  Reference: WBPaper00004310
    WBPaper00000635
    WBPaper00017625
    WBPaper00011220
    WBPaper00023070
  Method: Substitution_allele