WormBase Tree Display for Variation: WBVar00270604
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WBVar00270604 | Evidence | Paper_evidence | WBPaper00005369 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00270604 | ||||
Other_name | uCE4-963 | |||||
cewivar00040214 | ||||||
CE49285:p.Gln2His | ||||||
C01B10.6d.1:c.6A>C | ||||||
CE49389:p.Thr405Pro | ||||||
C01B10.6c.1:c.1213A>C | ||||||
CE31149:p.Thr485Pro | ||||||
C01B10.6a.1:c.1462A>C | ||||||
CE29552:p.Thr488Pro | ||||||
C01B10.6b.1:c.1453A>C | ||||||
HGVSg | CHROMOSOME_IV:g.6645028A>C | |||||
Sequence_details | SMap | S_parent | Sequence | C01B10 | ||
Flanking_sequences | AGATTGCCGTTTTAGCAATGTTTTGCAATATTTTTTTTCGAGTGGTAATAGTTTGGCACCCTTGCAATAAATCTTTATTTCAGGAAGCTCCACCAATGCA | CAGATACGACCCAATCATCAACAGGTTTTTAACATTTATGAAAATTAACTTTTTCATCATATTTGACTTTCAGACGCAAGTACTGTATCAACATCTTCAA | ||||
Mapping_target | C01B10 | |||||
Type_of_mutation | Substitution | A | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | ||||
Analysis | SNP_Swan | |||||
Million_mutation_project_reanalysis | ||||||
Status | Live | |||||
Affects | Gene | WBGene00015280 | ||||
Transcript | C01B10.6c.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0.1 | tolerated_low_confidence | ||||
PolyPhen | 0 | unknown | ||||
HGVSc | C01B10.6c.1:c.1213A>C | |||||
HGVSp | CE49389:p.Thr405Pro | |||||
cDNA_position | 1213 | |||||
CDS_position | 1213 | |||||
Protein_position | 405 | |||||
Exon_number | 12/13 | |||||
Codon_change | Aca/Cca | |||||
Amino_acid_change | T/P | |||||
C01B10.6d.1 (11) | ||||||
C01B10.6b.1 (12) | ||||||
C01B10.6a.1 (12) | ||||||
Reference | WBPaper00005369 | |||||
Method | SNP_Swan |