WormBase Tree Display for Variation: WBVar00145017
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WBVar00145017 | Evidence | Paper_evidence | WBPaper00028462 | ||
---|---|---|---|---|---|
Name | Public_name | e2820 | |||
Other_name | T06H11.1g.1:c.137-1318_1227del | ||||
T06H11.1f.1:c.413-1318_1542del | |||||
T06H11.1b.1:c.263-1318_1353del | |||||
T06H11.1c.1:c.149-1318_1278del | |||||
T06H11.1d.1:c.293-1318_1422del | |||||
T06H11.1e.1:c.67+423_1197del | |||||
HGVSg | CHROMOSOME_X:g.10105589_10110649del | ||||
Sequence_details | SMap | S_parent | Sequence | T06H11 | |
Flanking_sequences | ttcaattaactaccgttttgctcgaccaaa | gtggaccgcacctccggcgcggccccgact | |||
Mapping_target | T06H11 | ||||
Type_of_mutation | Deletion | ||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Laboratory | CB | ||||
Status | Live | ||||
Affects | Gene | WBGene00195326 | |||
WBGene00198156 | |||||
WBGene00006792 | |||||
Transcript | T06H11.1f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1f.1:c.413-1318_1542del | ||||
cDNA_position | ?-1542 | ||||
CDS_position | ?-1542 | ||||
Protein_position | ?-514 | ||||
Intron_number | 4-12/14 | ||||
Exon_number | 5-13/15 | ||||
T06H11.1e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1e.1:c.67+423_1197del | ||||
cDNA_position | ?-1279 | ||||
CDS_position | ?-1197 | ||||
Protein_position | ?-399 | ||||
Intron_number | 2-10/13 | ||||
Exon_number | 3-11/14 | ||||
T06H11.1d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1d.1:c.293-1318_1422del | ||||
cDNA_position | ?-1422 | ||||
CDS_position | ?-1422 | ||||
Protein_position | ?-474 | ||||
Intron_number | 1-9/11 | ||||
Exon_number | 2-10/12 | ||||
T06H11.6 | VEP_consequence | transcript_ablation | |||
VEP_impact | HIGH | ||||
Exon_number | 1/1 | ||||
T06H11.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1b.1:c.263-1318_1353del | ||||
cDNA_position | ?-1403 | ||||
CDS_position | ?-1353 | ||||
Protein_position | ?-451 | ||||
Intron_number | 3-10/12 | ||||
Exon_number | 4-11/13 | ||||
T06H11.12 | VEP_consequence | transcript_ablation | |||
VEP_impact | HIGH | ||||
Exon_number | 1/1 | ||||
T06H11.1g.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1g.1:c.137-1318_1227del | ||||
cDNA_position | ?-1369 | ||||
CDS_position | ?-1227 | ||||
Protein_position | ?-409 | ||||
Intron_number | 2-9/12 | ||||
Exon_number | 3-10/13 | ||||
T06H11.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
VEP_impact | HIGH | ||||
cDNA_position | ?-1467 | ||||
CDS_position | ?-1467 | ||||
Protein_position | ?-489 | ||||
Intron_number | 1-8/11 | ||||
Exon_number | 1-9/12 | ||||
T06H11.1c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1c.1:c.149-1318_1278del | ||||
cDNA_position | ?-1368 | ||||
CDS_position | ?-1278 | ||||
Protein_position | ?-426 | ||||
Intron_number | 2-10/13 | ||||
Exon_number | 3-11/14 | ||||
Genetics | Interpolated_map_position | X | 1.7477 | ||
Reference | WBPaper00028462 | ||||
Method | Deletion_allele |