WormBase Tree Display for Sequence: Y54G9A
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| Y54G9A | DNA | Y54G9A | 42140 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (15) | ||||
| CDS_child (228) | ||||||
| Transcript (18) | ||||||
| Nongenomic | yk284d1 | 29128 | 31034 | |||
| PCR_product (23) | ||||||
| Allele (1388) | ||||||
| Oligo_set | Aff_Y54G9A.1 | 5370 | 6996 | |||
| Aff_Y54G9A.2 | 13652 | 11862 | ||||
| Aff_Y54G9A.3 | 17422 | 18795 | ||||
| Aff_Y54G9A.4 | 20657 | 19069 | ||||
| Aff_Y54G9A.5 | 29188 | 30987 | ||||
| Aff_Y54G9A.6 | 33887 | 35514 | ||||
| Feature_object (276) | ||||||
| Feature_data | Y54G9A:Polysome | 1 | 42140 | |||
| Y54G9A:TranscriptionallyActiveRegion | 1 | 42140 | ||||
| Y54G9A:ChIPSeqTF | 1 | 42140 | ||||
| Y54G9A:TRF | 1 | 42140 | ||||
| Y54G9A:Dust | 1 | 42140 | ||||
| Y54G9A:inverted | 1 | 42140 | ||||
| Homol_data (19) | ||||||
| Structure | From | Source | CHROMOSOME_II | |||
| Overlap_right | R06B9 | 42041 | ||||
| Overlap_left | Y48E1A | |||||
| Clone_left_end | R06B9 | 42041 | ||||
| Y54G9A | 1 | |||||
| Clone_right_end | Y48E1A | 100 | ||||
| Y54G9A | 42140 | |||||
| DB_info | Database | EMBL | NDB_AC | AL032648 | ||
| NDB_SV | AL032648.2 | |||||
| Secondary_accession | Z98869 | |||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 28147 | |||||
| [121025] Sequence correction WBsf267926 : Deletion T-1 bases @ 41714 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Smye R | ||||
| From_laboratory | HX | |||||
| Date_directory | 980601 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | Y54G9A | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 218c6a6ef8881efdbee3daf716fae4b6 | ||||
| Status | Finished | 01 Jun 1998 00:00:00 | ||||
| Submitted | 29 Oct 1998 00:00:00 | |||||
| Annotated | 01 Jan 1980 00:00:00 | |||||
| Map | Sequence-II | Ends | Left | 7888 | ||
| Right | 7904 | |||||
| Interpolated_map_position | II | 19.7119 | ||||
| Assembly_tags | Finished Left | 1 | 4 | Y54G9A | ||
| Clone right end | 95 | 100 | Y48E1A | |||
| annotation | 28129 | 28157 | [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other CommentRegion consisting of poor quality reads.Screening of a short insert library derived from a pUC clone which covers the region failed to find clones to sequence across this region. | |||
| 32975 | 33038 | [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Comment Region consisting of short insert reads derived from a single pUC clone. | ||||
| 33506 | 33683 | [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Comment Region consisting of short insert reads derived from a single pUC clone. | ||||
| 39465 | 39536 | [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Comment Region consisting of short insert reads derived from a PCR of YAC DNA. | ||||
| Finished Right | 42137 | 42140 | Y54G9A | |||
| Clone left end | 42041 | 42046 | R06B9 | |||
| Method | Genomic_canonical |
