WormBase Tree Display for Sequence: Y105E8A

Y105E8A DNA: Y105E8A 277606
  SMap: S_child (13)
  Structure: From: Source: CHROMOSOME_I
    Overlap_right: Y105E8B 277503
    Overlap_left: F49B2
    Clone_left_end: Y54E5 356130
      Y105E8A 1
    Clone_right_end: F49B2 104
      Y105E8A 277606
  DB_info: Database: EMBL NDB_AC AL132876
        NDB_SV AL132876.5
    Secondary_accession: AL132903
      AL132905
      AL132944
    DB_remark: [121025] Sequence correction: SNP 0 bases @ 14272
      [121025] Sequence correction: SNP 0 bases @ 28945
      [121025] Sequence correction: SNP 0 bases @ 147332
      [121025] Sequence correction: SNP 0 bases @ 184879
      [121025] Sequence correction: SNP 0 bases @ 253192
      [121025] Sequence correction WBsf267937 : Insertion C1 bases from @ 16797
      [121025] Sequence correction WBsf268600 : Deletion T-1 bases @ 43801
      [121025] Sequence correction WBsf268103 : Deletion A-1 bases @ 266183
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Sulston JE
    From_laboratory: HX
    Date_directory: 010723
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: Y105E8A
  Properties: Genomic_canonical
    Checksum: MD5: 642a5b5a2b9fdb228bd4450101a7bbca
    Status: Finished: 15 Mar 2001 00:00:00
      Submitted: 31 Jul 2001 00:00:00
      Annotated: 30 Oct 2001 00:00:00
  Map: Sequence-I Ends: Left: 6474
        Right: 6508
  Interpolated_map_position: I 25.7251
  Assembly_tags: Finished Left 1 4 Y105E8A
      277504 277507 Y105E8B
    Clone right end 101 104 F49B2
    annotation 8179 8185 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [X] Other Add a comment here- Only single direction primer reads region is in the arm of an inverted repeat.
      16717 17016 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region only contains reads from a SIL of subclone ma10g6
      30665 30685 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - in inverted repeat
      18816 19038 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region only contains reads subcloned from a PCR product from clone DNA.
      19059 19083 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region is in arm of inverted repeat.
      168172 168162 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region also contains unidirectional primers.
      187994 188038 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region contains only subclones of a PCR product on clone DNA.
      188086 188076 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here -
      194264 194266 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by subcloned reads froma PCR product on clone DNA.
      58651 58667 First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here -
      148199 148812 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [X] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Region contains forced join.
      240179 240451 First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by SIL reads from subclone uz46f4.
      277246 277255 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - inverted and tandem repeats, clones unstable
    Finished Right 277607 277604 Y105E8A
  Method: Genomic_canonical