WormBase Tree Display for Sequence: T08D2
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| T08D2 | DNA | T08D2 | 39977 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (11) | ||||
| CDS_child (134) | ||||||
| Transcript | T08D2.10 | 32663 | 32643 | |||
| T08D2.11 | 34908 | 35129 | ||||
| T08D2.1.1 | 3981 | 3376 | ||||
| T08D2.4.1 | 18243 | 18703 | ||||
| T08D2.5.1 | 18222 | 20241 | ||||
| T08D2.5.2 | 18654 | 20223 | ||||
| T08D2.6.1 | 23016 | 20633 | ||||
| T08D2.7.1 | 23538 | 32040 | ||||
| T08D2.8.1 | 33681 | 38748 | ||||
| Pseudogene | T08D2.2 | 4883 | 12686 | |||
| T08D2.3 | 14027 | 17847 | ||||
| T08D2.9 | 1767 | 485 | ||||
| PCR_product (33) | ||||||
| Allele (516) | ||||||
| Oligo_set (11) | ||||||
| Feature_object (152) | ||||||
| Feature_data | T08D2:Polysome | 1 | 39977 | |||
| T08D2:TranscriptionallyActiveRegion | 1 | 39977 | ||||
| T08D2:ChIPSeqTF | 1 | 39977 | ||||
| T08D2:TRF | 1 | 39977 | ||||
| T08D2:Dust | 1 | 39977 | ||||
| T08D2:inverted | 1 | 39977 | ||||
| Homol_data (20) | ||||||
| Structure | From | Source | CHROMOSOME_X | |||
| Overlap_right | Y73B3B | 39874 | ||||
| Overlap_left | Y73B3A | |||||
| Clone_left_end | T08D2 | 1 | ||||
| Clone_right_end | T08D2 | 39977 | ||||
| DB_info | Database | EMBL | NDB_AC | FO081719 | ||
| NDB_ID | _AC199170 | |||||
| NDB_SV | FO081719.2 | |||||
| Secondary_accession | AC199170 | |||||
| Z92839 | ||||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 28121 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | McMurray AA | ||||
| From_laboratory | RW | |||||
| Date_directory | 050329 | |||||
| Species | Caenorhabditis elegans | |||||
| Visible | Clone | T08D2 | ||||
| Remark | [991124 dl] Genomic_canonical reset because the sequence does not underlie Y60A3A. | |||||
| [991124 dl] Floating cosmid without a map position | ||||||
| [001208 dl] Fits into SUPERLINK_RWXL, GATC overlaps with Y73B3 sections | ||||||
| [020501 dl] Flipped to fit into GSC SUPERLINK, communicated by Darin Blasier 020423 | ||||||
| [050329 dl] Flipped back into original orientation based on EST & homol mapping. Confirmed by GSC via Tamberlyn Bieri | ||||||
| [20070222 db] This clone was originally sequenced by the Sanger Center; ownership officially transferred to GSC | ||||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 11f7186fbd08da4796ffad321b1fd72a | ||||
| Status | Finished | 15 Dec 1997 00:00:00 | ||||
| Submitted | 09 Mar 1997 00:00:00 | |||||
| Annotated | 01 Jan 1980 00:00:00 | |||||
| Map | Sequence-X | Ends | Left | 11304 | ||
| Right | 11328 | |||||
| Interpolated_map_position | X | -20.6084 | ||||
| Assembly_tags | Clone_left_end | 1 | 4 | T08D2 | ||
| Clone_right_end | 39974 | 39977 | T08D2 | |||
| Method | Genomic_canonical |
