WormBase Tree Display for Sequence: T01H3
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T01H3 | DNA | T01H3 | 21868 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (11) | ||||
CDS_child (169) | ||||||
Transcript (11) | ||||||
Nongenomic | yk240h2 | 426 | 2767 | |||
PCR_product (15) | ||||||
Allele (342) | ||||||
Oligo_set | Aff_T01H3.1 | 8771 | 7916 | |||
Aff_T01H3.2 | 4618 | 3806 | ||||
Aff_T01H3.3 | 1550 | 739 | ||||
Aff_T01H3.4 | 11332 | 12027 | ||||
Aff_T01H3.5 | 9277 | 9921 | ||||
Feature_object (365) | ||||||
Feature_data | T01H3:Polysome | 1 | 21868 | |||
T01H3:TranscriptionallyActiveRegion | 1 | 21868 | ||||
T01H3:ChIPSeqTF | 1 | 21868 | ||||
T01H3:TRF | 1 | 21868 | ||||
T01H3:Dust | 1 | 21868 | ||||
T01H3:inverted | 1 | 21868 | ||||
Homol_data (17) | ||||||
Structure | From | Source | CHROMOSOME_II | |||
Overlap_right | ZK675 | 21768 | ||||
Overlap_left | T09A5 | |||||
Clone_left_end | T01H3 | 1 | ||||
C26C6 | 21768 | |||||
Clone_right_end | T09A5 | |||||
DB_info | Database | EMBL | NDB_AC | Z68317 | ||
NDB_SV | Z68317.3 | |||||
DB_remark | [100415] Sequence correction: deletion -1 bases agctgcaaGgcggatcc @ 785 | |||||
[121025] Sequence correction WBsf268172 : Deletion T-1 bases @ 9206 | ||||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin (5) | ||||||
Visible | Clone | T01H3 | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | 55ae53a7547a09fe9ef65daf6f786c73 | ||||
Status | Finished | 14 Jul 1995 00:00:00 | ||||
Submitted | 22 Dec 1995 00:00:00 | |||||
Annotated | 21 Dec 1995 00:00:00 | |||||
Map | Sequence-II | Ends | Left | 4670 | ||
Right | 4695 | |||||
Interpolated_map_position | II | 0.598404 | ||||
Assembly_tags | annotation | 1 | 4 | left end of T01H3 | ||
8319 | 8321 | mis-ligation | ||||
12858 | 12858 | mutation on term | ||||
13231 | 13231 | This is a false join between the 2 contigs across a gap. This gap comprises part of a tandem repeat. We can see a number of different units in this repeat. The most obvious are unit 1 35bp unit 2 26bp These 2 units are repeated in various order across the region and are interspersed with other smaller repeated motifs Restriction digest and pcr data across the area both suggest a further 200bp missing. Primary analysis suggests that this repetitive region is not coding, so no further work is being planned to complete the region. | ||||
15238 | 15238 | Missing base | ||||
21768 | 21771 | left end of ZK675 | ||||
21865 | 21868 | end of t01h3 finishing bit | ||||
Method | Genomic_canonical |