WormBase Tree Display for Sequence: F35C12
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| F35C12 | DNA | F35C12 | 20355 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00003569 | 13748 | 17919 | |
| WBGene00202441 | 2756 | 2697 | ||||
| WBGene00304992 | 20192 | 17849 | ||||
| WBGene00198922 | 11639 | 11804 | ||||
| WBGene00200924 | 11804 | 11640 | ||||
| CDS_child (99) | ||||||
| Transcript | F35C12.4 | 11639 | 11804 | |||
| F35C12.5 | 11804 | 11640 | ||||
| F35C12.6 | 2756 | 2697 | ||||
| F35C12.2a.1 | 13748 | 17919 | ||||
| F35C12.2b.1 | 17096 | 17656 | ||||
| F35C12.7.1 | 19037 | 17878 | ||||
| F35C12.7.2 | 20192 | 17849 | ||||
| PCR_product | cenix:234-e10 | 10030 | 10179 | |||
| cenix:71-b12 | 14477 | 15639 | ||||
| cenix:95-b6 | 18104 | 19765 | ||||
| mv_CAA06686 | 13749 | 17654 | ||||
| mv_F35C12.1 | 10003 | 10205 | ||||
| mv_F35C12.3 | 17942 | 20210 | ||||
| sjj_F35C12.1 | 9610 | 10621 | ||||
| sjj_F35C12.2 | 13840 | 15038 | ||||
| sjj_F35C12.3 | 18500 | 20191 | ||||
| smd_F35C12.2 | 14113 | 15192 | ||||
| Allele (268) | ||||||
| Oligo_set | Aff_F26E4.11 | 200 | 1071 | |||
| Aff_F35C12.1 | 10206 | 10001 | ||||
| Aff_F35C12.2 | 15787 | 17656 | ||||
| Aff_F35C12.3 | 19058 | 17940 | ||||
| Feature_object (143) | ||||||
| Feature_data | F35C12:Polysome | 1 | 20355 | |||
| F35C12:TranscriptionallyActiveRegion | 1 | 20355 | ||||
| F35C12:ChIPSeqTF | 1 | 20355 | ||||
| F35C12:TRF | 1 | 20355 | ||||
| F35C12:Dust | 1 | 20355 | ||||
| F35C12:inverted | 1 | 20355 | ||||
| Homol_data (19) | ||||||
| Structure | From | Source | CHROMOSOME_I | |||
| Overlap_right | Y67A6A | 20256 | ||||
| Overlap_left | F26E4 | |||||
| Clone_right_end | F26E4 | 104 | ||||
| F35C12 | 20355 | |||||
| DB_info | Database | EMBL | NDB_AC | Z81075 | ||
| NDB_SV | Z81075.1 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Baynes C | ||||
| From_laboratory | HX | |||||
| Date_directory | 961001 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | F35C12 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 08cc5aee9143a10c671d64545ceb785d | ||||
| Status | Finished | 01 Oct 1996 00:00:00 | ||||
| Submitted | 21 Oct 1996 00:00:00 | |||||
| Annotated | 20 Jan 1997 00:00:00 | |||||
| Map | Sequence-I | Ends | Left | 4730 | ||
| Right | 4755 | |||||
| Interpolated_map_position | I | 3.91186 | ||||
| Assembly_tags | Finished Left | 1 | 1 | |||
| Clone right end | 104 | 101 | F26E4 | |||
| 20352 | 20355 | |||||
| annotation | 8803 | 8817 | single read has 16 Cs at this point | |||
| 10280 | 10280 | single read shows GG, but all others (with primer and terminator chemistry) show a clear single G. | ||||
| 13413 | 13413 | single read shows 2Gs here, but on resequencing with terminators shows a clear single G, so we assume the GG is a gel artifact | ||||
| 15413 | 15413 | single read shows point mutation T > A | ||||
| 16504 | 16636 | part of arm of inverted repeat has a single read only | ||||
| 11800 | 11645 | unknown/unstable run of CTs. Size is approximately correct within the accuracy of restriction digests | ||||
| Finished Right | 20355 | 20355 | ||||
| Method | Genomic_canonical |
