WormBase Tree Display for Sequence: F25B5
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| F25B5 | DNA | F25B5 | 35983 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (12) | ||||
| CDS_child (475) | ||||||
| Transcript (26) | ||||||
| Nongenomic | SP4H2 | 4806 | 5181 | |||
| yk237f2 | 25770 | 26069 | ||||
| yk294d2 | 32394 | 35255 | ||||
| yk307d2 | 15855 | 17279 | ||||
| yk363c6 | 10094 | 12097 | ||||
| PCR_product (41) | ||||||
| Allele (567) | ||||||
| Oligo_set | Aff_F25B5.1 | 34217 | 35114 | |||
| Aff_F25B5.2 | 25143 | 25845 | ||||
| Aff_F25B5.3 | 16295 | 17035 | ||||
| Aff_F25B5.4 | 6874 | 7523 | ||||
| Aff_F25B5.5 | 8467 | 7731 | ||||
| Aff_F25B5.6 | 10843 | 10194 | ||||
| Aff_F25B5.7 | 18186 | 17524 | ||||
| AFFX-Ce_Ubiquitin_3_at | 7005 | 7515 | ||||
| AFFX-Ce_Ubiquitin_5_at | 4832 | 6903 | ||||
| AFFX-Ce_Ubiquitin_M_at | 5371 | 6503 | ||||
| Feature_object (599) | ||||||
| Feature_data | F25B5:Polysome | 1 | 35983 | |||
| F25B5:TranscriptionallyActiveRegion | 1 | 35983 | ||||
| F25B5:ChIPSeqTF | 1 | 35983 | ||||
| F25B5:TRF | 1 | 35983 | ||||
| F25B5:Dust | 1 | 35983 | ||||
| F25B5:inverted | 1 | 35983 | ||||
| Homol_data (21) | ||||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | T04C9 | 35384 | ||||
| Overlap_left | EGAP1 | |||||
| Clone_left_end | F25B5 | 1 | ||||
| Y42G9 | 14923 | |||||
| T04C9 | 35784 | |||||
| DB_info | Database | EMBL | NDB_AC | FO081045 | ||
| NDB_ID | _U23172 | |||||
| NDB_SV | FO081045.2 | |||||
| Secondary_accession | U23172 | |||||
| DB_remark | The 5' clone is EGAP1, 200 bp overlap; the 3' clone is T04C9, 600 bp overlap. Actual start of this clone is at base position 1 of F25B5; actual end is at 7091 of T04C9. | |||||
| [121025] Sequence correction: SNP 0 bases @ 26866 | ||||||
| [121025] Sequence correction WBsf267900 : Insertion C1 bases from @ 971 | ||||||
| [121025] Sequence correction WBsf268307 : Insertion C1 bases from @ 2515 | ||||||
| [121025] Sequence correction WBsf268128 : Insertion G1 bases from @ 14762 | ||||||
| [121025] Sequence correction WBsf268444 : Insertion T1 bases from @ 18538 | ||||||
| [121025] Sequence correction WBsf268298 : Insertion C1 bases from @ 22166 | ||||||
| [121025] Sequence correction WBsf268441 : Deletion G-1 bases @ 33325 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Taich A | ||||
| From_laboratory | RW | |||||
| Date | 01 Nov 1994 00:00:00 | |||||
| Species | Caenorhabditis elegans | |||||
| Visible | Clone | F25B5 | ||||
| Remark | A "g" was added at base 17771, a "c" was added at base 17798, and another "c" was added at base 17807. [tb 20060712] | |||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | a567b841232330c938b85fac5b1d653a | ||||
| Status | Finished | |||||
| Submitted | 01 Nov 1994 00:00:00 | |||||
| Map | Sequence-III | |||||
| Interpolated_map_position | III | -1.42985 | ||||
| Method | Genomic_canonical |
