WormBase Tree Display for Sequence: CC4
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| CC4 | DNA | CC4 | 32063 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00004895 | 7323 | 24379 | |
| WBGene00305332 | 24896 | 25465 | ||||
| CDS_child (70) | ||||||
| Transcript | CC4.4 | 24896 | 25465 | |||
| CC4.3.1 | 7323 | 15854 | ||||
| CC4.3.2 | 7323 | 24379 | ||||
| PCR_product | cenix:182-h11 | 5768 | 5917 | |||
| cenix:55-f1 | 26673 | 27227 | ||||
| cenix:71-b8 | 7652 | 8756 | ||||
| mv_CC4.2 | 5748 | 6653 | ||||
| mv_CC4.3 | 7410 | 15656 | ||||
| p_CC4.3_93 | 6654 | 7408 | ||||
| sjj2_ZK256.1a | 26673 | 27228 | ||||
| sjj_CC4.2 | 5384 | 7028 | ||||
| sjj_CC4.3 | 7347 | 9593 | ||||
| Allele (503) | ||||||
| Oligo_set | Aff_CC4.2 | 5747 | 6655 | |||
| Aff_CC4.3 | 10617 | 15658 | ||||
| Aff_ZK256.1B | 30832 | 32451 | ||||
| Feature_object (179) | ||||||
| Feature_data | CC4:Polysome | 1 | 32063 | |||
| CC4:TranscriptionallyActiveRegion | 1 | 32063 | ||||
| CC4:ChIPSeqTF | 1 | 32063 | ||||
| CC4:TRF | 1 | 32063 | ||||
| CC4:Dust | 1 | 32063 | ||||
| CC4:inverted | 1 | 32063 | ||||
| Homol_data (20) | ||||||
| Structure | From | Source | CHROMOSOME_I | |||
| Overlap_right | ZK256 | 31961 | ||||
| Overlap_left | C47B2 | |||||
| Clone_left_end | CC4 | 1 | ||||
| ZK256 | 25224 | |||||
| Clone_right_end | C47B2 | 15242 | ||||
| CC4 | 32063 | |||||
| DB_info | Database | EMBL | NDB_AC | Z81490 | ||
| NDB_SV | Z81490.2 | |||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 27289 | |||||
| [121025] Sequence correction: SNP 0 bases @ 27299 | ||||||
| [121025] Sequence correction: SNP 0 bases @ 27329 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Kershaw JK | ||||
| From_laboratory | HX | |||||
| Date_directory | 970505 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | CC4 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 98d683d13520d48431c5ef8deda52c6f | ||||
| Status | Finished | 05 May 1997 00:00:00 | ||||
| Submitted | 06 Nov 1996 00:00:00 | |||||
| Annotated | 01 Jan 1980 00:00:00 | |||||
| Map | Sequence-I | Ends | Left | 6582 | ||
| Right | 6601 | |||||
| Interpolated_map_position | I | 16.8531 | ||||
| Assembly_tags | Finished Left | 1 | 4 | CC4 | ||
| Clone left end | 1 | 4 | CC4 | |||
| 25224 | 25227 | ZK256 | ||||
| annotation | 26393 | 26418 | single M13 clone. base accuracy cannot be guarenteed. | |||
| 26535 | 26537 | unclear. there may be only 2 Cs here | ||||
| 26496 | 26496 | this base is unclear | ||||
| 26494 | 26494 | this base could be a G | ||||
| 26481 | 26481 | this base could be a G | ||||
| 27400 | 27400 | this base could be a T | ||||
| 27395 | 27395 | this base could be a T | ||||
| 27299 | 27299 | this base is very unclear | ||||
| 27286 | 27286 | this base may not exist | ||||
| 27738 | 30671 | 40 copies of 1 36bp element and a 79bp element. Digest with AVAII and SALI shows this region is about the right size. base accuracy cannot be guarenteed over this area. | ||||
| Clone right end | 32063 | 32060 | CC4 | |||
| 15239 | 15242 | C47B2 | ||||
| Finished Right | 32063 | 32060 | CC4 | |||
| Method | Genomic_canonical |
