WormBase Tree Display for Sequence: C54C6
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| C54C6 | DNA | C54C6 | 35500 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (13) | ||||
| CDS_child (152) | ||||||
| Transcript (14) | ||||||
| Transposon | WBTransposon00000225 | 20797 | 22054 | |||
| PCR_product (38) | ||||||
| Allele (494) | ||||||
| Oligo_set | Aff_C54C6.1 | 5549 | 5824 | |||
| Aff_C54C6.2 | 16617 | 15233 | ||||
| Aff_C54C6.4 | 31992 | 33391 | ||||
| Aff_C54C6.5 | 26745 | 26246 | ||||
| Feature_object (289) | ||||||
| Feature_data | C54C6:Polysome | 1 | 35500 | |||
| C54C6:TranscriptionallyActiveRegion | 1 | 35500 | ||||
| C54C6:ChIPSeqTF | 1 | 35500 | ||||
| C54C6:TRF | 1 | 35500 | ||||
| C54C6:Dust | 1 | 35500 | ||||
| C54C6:inverted | 1 | 35500 | ||||
| Homol_data (20) | ||||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | C48D5 | 35399 | ||||
| Overlap_left | M01F1 | |||||
| Clone_left_end | C54C6 | 1 | ||||
| C48D5 | 35399 | |||||
| DB_info | Database | EMBL | NDB_AC | Z77131 | ||
| NDB_SV | Z77131.1 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Lightning J | ||||
| From_laboratory | HX | |||||
| Date_directory | 960425 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | C54C6 | ||||
| Remark | Transposon C54C6.3 converted into an S_Child [020208 kj] | |||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | cfcce0e092294fc9057f1e43ea1f6a30 | ||||
| Status | Finished | 25 Apr 1996 00:00:00 | ||||
| Submitted | 20 Jul 1996 00:00:00 | |||||
| Annotated | 16 Jul 1996 00:00:00 | |||||
| Map | Sequence-III | Ends | Left | 1516 | ||
| Right | 1541 | |||||
| Interpolated_map_position | III | -5.82084 | ||||
| Assembly_tags | annotation | 12496 | 12609 | region covered by a single read only terms and primers. All pcrs across region failed. This single read was found by screening Phagemid libraries and was the only real clone recovered | ||
| 13476 | 13476 | T has high G background on most reads but the evidence suggests the T is real | ||||
| 13597 | 13598 | edited to GG. S1 reads show clear GG, but terminators call GGG. Terms do however have the spacing of 2 Gs, and none of them show 3 clear peaks, so the evidence suggests GG | ||||
| 13863 | 13865 | edited to 3Cs, primer and terminator data agree with this. 2 terminator walks have the spacing of 4 Cs, but both were run on the same gel, suggesting a gel artifact. | ||||
| Method | Genomic_canonical |
