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WormBase Tree Display for Sequence: C38H2

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Name Class

C38H2DNAC38H231950
SMapS_childGene_childWBGene001999242338023335
WBGene00008018744915727
WBGene000080202906927806
WBGene000080192426627828
CDS_child (160)
TranscriptC38H2.42338023335
C38H2.1a.1744915727
C38H2.1b.11125915547
C38H2.2.12426627828
C38H2.3.12906927806
PCR_product (11)
Allele (582)
Oligo_setAff_C38H2.11424015546
Aff_C38H2.22555327252
Feature_object (244)
Feature_dataC38H2:Polysome131950
C38H2:TranscriptionallyActiveRegion131950
C38H2:ChIPSeqTF131950
C38H2:TRF131950
C38H2:Dust131950
C38H2:inverted131950
Homol_data (19)
StructureFromSourceCHROMOSOME_III
Overlap_rightM03C1131850
Overlap_leftT07C4
Clone_left_endC38H21
DB_infoDatabaseEMBLNDB_ACZ35641
NDB_SVZ35641.4
DB_remark[021111 dl] Corrected sequence based on Thierry-Mieg transcript analysis. Multiple changes (insertion,deletion and substitution) leading to no net gain/loss of sequence
[081030] Sequence correction: insertion 1 bases atagcagcttcagttgaaaggaatGgctccgtgagccgtgattat @ 11920
[121025] Sequence correction: SNP 0 bases @ 4513
[121025] Sequence correction: SNP 0 bases @ 10735
[121025] Sequence correction WBsf268616 : Insertion C1 bases from @ 24634
[121025] Sequence correction WBsf268656 : Deletion C-1 bases @ 27819
[121025] Sequence correction WBsf268334 : Deletion A-1 bases @ 31478
KeywordHTG
EMBL_dump_infoEMBL_dump_methodworm_EMBL-dump
OriginFrom_authorSims MA
From_laboratoryHX
Date_directory081030
SpeciesCaenorhabditis elegans
StrainWBStrain00000001
VisibleCloneC38H2
ReferenceWBPaper00022393
PropertiesGenomic_canonical
ChecksumMD5adbea6133763f7ad47d5b4037015092a
StatusFinished31 Jan 1994 00:00:00
Submitted03 Aug 1994 00:00:00
Annotated02 Aug 1994 00:00:00
MapSequence-IIIEndsLeft5381
Right5413
Interpolated_map_positionIII2.47837
Assembly_tagsannotation13Start of C38H2
1137411375Submit as CC (majority of reads in pjb8). Note when in cosmid vector Lorist 4 it is CG.
1137511374Submit as CC (majority of reads in pjb8). Note when in cosmid vector Lorist 4 it is CG.
3185031852Beginning of overlap with M03C11
Finished Left31C38H2
Finished Right3195031947C38H2
MethodGenomic_canonical