WormBase Tree Display for Sequence: C38H2
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C38H2 | DNA | C38H2 | 31950 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child | WBGene00199924 | 23380 | 23335 | |
WBGene00008018 | 7449 | 15727 | ||||
WBGene00008020 | 29069 | 27806 | ||||
WBGene00008019 | 24266 | 27828 | ||||
CDS_child (160) | ||||||
Transcript | C38H2.4 | 23380 | 23335 | |||
C38H2.1a.1 | 7449 | 15727 | ||||
C38H2.1b.1 | 11259 | 15547 | ||||
C38H2.2.1 | 24266 | 27828 | ||||
C38H2.3.1 | 29069 | 27806 | ||||
PCR_product (11) | ||||||
Allele (582) | ||||||
Oligo_set | Aff_C38H2.1 | 14240 | 15546 | |||
Aff_C38H2.2 | 25553 | 27252 | ||||
Feature_object (244) | ||||||
Feature_data | C38H2:Polysome | 1 | 31950 | |||
C38H2:TranscriptionallyActiveRegion | 1 | 31950 | ||||
C38H2:ChIPSeqTF | 1 | 31950 | ||||
C38H2:TRF | 1 | 31950 | ||||
C38H2:Dust | 1 | 31950 | ||||
C38H2:inverted | 1 | 31950 | ||||
Homol_data (19) | ||||||
Structure | From | Source | CHROMOSOME_III | |||
Overlap_right | M03C11 | 31850 | ||||
Overlap_left | T07C4 | |||||
Clone_left_end | C38H2 | 1 | ||||
DB_info | Database | EMBL | NDB_AC | Z35641 | ||
NDB_SV | Z35641.4 | |||||
DB_remark | [021111 dl] Corrected sequence based on Thierry-Mieg transcript analysis. Multiple changes (insertion,deletion and substitution) leading to no net gain/loss of sequence | |||||
[081030] Sequence correction: insertion 1 bases atagcagcttcagttgaaaggaatGgctccgtgagccgtgattat @ 11920 | ||||||
[121025] Sequence correction: SNP 0 bases @ 4513 | ||||||
[121025] Sequence correction: SNP 0 bases @ 10735 | ||||||
[121025] Sequence correction WBsf268616 : Insertion C1 bases from @ 24634 | ||||||
[121025] Sequence correction WBsf268656 : Deletion C-1 bases @ 27819 | ||||||
[121025] Sequence correction WBsf268334 : Deletion A-1 bases @ 31478 | ||||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Sims MA | ||||
From_laboratory | HX | |||||
Date_directory | 081030 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | C38H2 | ||||
Reference | WBPaper00022393 | |||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | adbea6133763f7ad47d5b4037015092a | ||||
Status | Finished | 31 Jan 1994 00:00:00 | ||||
Submitted | 03 Aug 1994 00:00:00 | |||||
Annotated | 02 Aug 1994 00:00:00 | |||||
Map | Sequence-III | Ends | Left | 5381 | ||
Right | 5413 | |||||
Interpolated_map_position | III | 2.47837 | ||||
Assembly_tags | annotation | 1 | 3 | Start of C38H2 | ||
11374 | 11375 | Submit as CC (majority of reads in pjb8). Note when in cosmid vector Lorist 4 it is CG. | ||||
11375 | 11374 | Submit as CC (majority of reads in pjb8). Note when in cosmid vector Lorist 4 it is CG. | ||||
31850 | 31852 | Beginning of overlap with M03C11 | ||||
Finished Left | 3 | 1 | C38H2 | |||
Finished Right | 31950 | 31947 | C38H2 | |||
Method | Genomic_canonical |