WormBase Tree Display for Sequence: C36F7
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| C36F7 | DNA | C36F7 | 39211 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (28) | ||||
| CDS_child (171) | ||||||
| Transcript (36) | ||||||
| Genomic_non_canonical | WRM064cH08 | 4187 | 33597 | |||
| WRM0634dG07 | 4272 | 37589 | ||||
| WRM0637dA03 | 5076 | 35938 | ||||
| PCR_product (19) | ||||||
| Allele (450) | ||||||
| Oligo_set | Aff_C36F7.1 | 1416 | 325 | |||
| Aff_C36F7.2 | 10377 | 10809 | ||||
| Aff_C36F7.3A | 30314 | 27629 | ||||
| Aff_C36F7.4 | 36442 | 34255 | ||||
| Aff_C36F7.5 | 37634 | 36940 | ||||
| Feature_object (206) | ||||||
| Feature_data | C36F7:Polysome | 1 | 39211 | |||
| C36F7:TranscriptionallyActiveRegion | 1 | 39211 | ||||
| C36F7:ChIPSeqTF | 1 | 39211 | ||||
| C36F7:TRF | 1 | 39211 | ||||
| C36F7:Dust | 1 | 39211 | ||||
| C36F7:inverted | 1 | 39211 | ||||
| Homol_data (18) | ||||||
| Structure | From | Source | CHROMOSOME_I | |||
| Overlap_right | F42H11 | 39104 | ||||
| Overlap_left | C41G7 | |||||
| Clone_left_end | C36F7 | 1 | ||||
| Clone_right_end | C41G7 | 14443 | ||||
| C36F7 | 39211 | |||||
| DB_info | Database | EMBL | NDB_AC | Z81045 | ||
| NDB_SV | Z81045.1 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Lightning J | ||||
| From_laboratory | HX | |||||
| Date_directory | 960822 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | C36F7 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 2551e21164cca86fba68e7f3e9d95e34 | ||||
| Status | Finished | 22 Aug 1996 00:00:00 | ||||
| Submitted | 21 Oct 1996 00:00:00 | |||||
| Annotated | 23 Oct 1996 00:00:00 | |||||
| Map | Sequence-I | Ends | Left | 4598 | ||
| Right | 4611 | |||||
| Interpolated_map_position | I | 3.80165 | ||||
| Assembly_tags | Clone left end | 1 | 4 | C36F7 | ||
| Finished Left | 1 | 1 | ||||
| annotation | 7769 | 7771 | single read shows 4Cs, but this looks as if it is a sequencing artifact. All other reads (some terms and primers) show 3 Cs) | |||
| 8728 | 8731 | reads have the spacing of 4 Gs, but no read clearly defines 4 G peaks. Primer and terminator reads have been tried. Terminator data is TaqFS. We have been unable to confirm with "old" Taq terms. | ||||
| 18537 | 18540 | Foreard primer reads on both strandsgive a clear GAGAAA sequence withno sign of any compression or expansionA single positive TaqFs terminator agreesHowever, all -ve terminators show a"compression" of the second G overthe As, and a following expansion.This is true with both Taq and TaqFs | ||||
| 21447 | 21447 | single read has point mutation T > G | ||||
| Clone right end | 14440 | 14443 | C41G7 | |||
| 39208 | 39211 | C36F7 | ||||
| Finished Right | 39211 | 39211 | ||||
| Method | Genomic_canonical |
