WormBase Tree Display for Sequence: C31C9

C31C9 DNA: C31C9 41100
  SMap: S_child (12)
  Structure: From: Source: CHROMOSOME_II
    Overlap_right: Y48E1A 40997
    Overlap_left: F37B1
    Clone_left_end: C31C9 1
    Clone_right_end: F37B1 12724
      C31C9 41100
  DB_info: Database: EMBL NDB_AC Z83219
        NDB_SV Z83219.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Percy CM
    From_laboratory: HX
    Date_directory: 961031
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: C31C9
  Properties: Genomic_canonical
    Checksum: MD5: 7c0881f488a98741bcac58a9660ed53c
    Status: Finished: 31 Oct 1996 00:00:00
      Submitted: 09 Dec 1996 00:00:00
      Annotated: 16 Apr 1997 00:00:00
  Map: Sequence-II Ends: Left: 7852
        Right: 7873
  Interpolated_map_position: II 19.3908
  Assembly_tags: Finished Left 1 1
    Clone left end 4 1 Left hand end of C31C9.
    annotation 329 329 clones from cosmid F37B1 call sequence tggtc whereas clones from C31C9 call tggGc.
      17468 17468 2 reads show A, 4 other reads have variable A and G signals at this point. All 4 appear to be the same clone despite having the names th17h10/h11/h12 respectively. This suggests "clone stacking", so we feel the correct base is A
      17474 17474 point mutation og a t to a g in this clone only
      17987 17986 point mutation of G - C
        17987 point mutation of G - C in this template only
      32465 32465 point mutation in this clone of a t to a g
      33563 33588 very bad compression, sequence is probably correct. No single read gives the entire sequence, so a composite was achieved.
      35968 35968 point mutation?
    Clone right end 12721 12724 Right hand end of F37B1.
      41097 41100 C31C9
    Finished Right 41100 41100
  Method: Genomic_canonical