WormBase Tree Display for Sequence: C01A2
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| C01A2 | DNA | C01A2 | 40202 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00007216 | 20321 | 22204 | |
| WBGene00007219 | 30651 | 32309 | ||||
| WBGene00007215 | 16022 | 19408 | ||||
| WBGene00007213 | 39757 | 38100 | ||||
| WBGene00007218 | 9595 | 12574 | ||||
| WBGene00198708 | 9845 | 9790 | ||||
| WBGene00007217 | 12955 | 15287 | ||||
| WBGene00044982 | 36877 | 36900 | ||||
| WBGene00077546 | 5042 | 5552 | ||||
| WBGene00007214 | 25473 | 26834 | ||||
| CDS_child (180) | ||||||
| Transcript (15) | ||||||
| Nongenomic | yk335d7 | 25482 | 26668 | |||
| yk360h1 | 31945 | 32308 | ||||
| yk387e5 | 13055 | 15123 | ||||
| PCR_product (22) | ||||||
| Allele (1008) | ||||||
| Oligo_set | Aff_C01A2.1 | 37599 | 37000 | |||
| Aff_C01A2.2 | 25536 | 26683 | ||||
| Aff_C01A2.3 | 17300 | 18253 | ||||
| Aff_C01A2.4 | 20995 | 22132 | ||||
| Aff_C01A2.5 | 13587 | 15154 | ||||
| Aff_C01A2.6 | 11658 | 12498 | ||||
| Aff_W05H12.2 | 40599 | 40000 | ||||
| Feature_object (390) | ||||||
| Feature_data | C01A2:Polysome | 1 | 40202 | |||
| C01A2:TranscriptionallyActiveRegion | 1 | 40202 | ||||
| C01A2:ChIPSeqTF | 1 | 40202 | ||||
| C01A2:TRF | 1 | 40202 | ||||
| C01A2:Dust | 1 | 40202 | ||||
| C01A2:inverted | 1 | 40202 | ||||
| Homol_data (19) | ||||||
| Structure | From | Source | CHROMOSOME_I | |||
| Overlap_right | W05H12 | 40098 | ||||
| Overlap_left | Y40B1A | |||||
| Clone_left_end | C01A2 | 1 | ||||
| W05H12 | 18089 | |||||
| Clone_right_end | C01A2 | 40202 | ||||
| DB_info | Database | EMBL | NDB_AC | Z81029 | ||
| NDB_SV | Z81029.1 | |||||
| DB_remark | [981008 dl] : Cosmid flipped | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Kershaw JK | ||||
| From_laboratory | HX | |||||
| Date_directory | 981008 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | C01A2 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 23ca2dd0aa061d0e78e048863749728d | ||||
| Status | Finished | 08 Oct 1998 00:00:00 | ||||
| Submitted | 21 Oct 1996 00:00:00 | |||||
| Annotated | 05 Mar 1997 00:00:00 | |||||
| Map | Sequence-I | Ends | Left | 6812 | ||
| Right | 6835 | |||||
| Interpolated_map_position | I | 19.5505 | ||||
| Assembly_tags | Clone left end | 1 | 4 | C01A2 | ||
| 18089 | 18093 | W05H12 | ||||
| Finished Left | 1 | 4 | C01A2 | |||
| Clone right end | 40202 | 40199 | C01A2 | |||
| annotation | 36689 | 32334 | 27 base tandem repeat with slight base variation. 159 copies. Restriction digest with EcoR1 and AVAII suggests there may be 2 copies missing.Assembly over this area will be inaccurate. | |||
| Finished Right | 40202 | 40199 | C01A2 | |||
| Method | Genomic_canonical |
