WormBase Tree Display for Sequence: B0393
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| B0393 | DNA | B0393 | 30848 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (16) | ||||
| CDS_child (286) | ||||||
| Transcript (18) | ||||||
| Nongenomic | yk182g11 | 5024 | 5366 | |||
| yk200c10 | 20618 | 24685 | ||||
| yk270c11 | 8215 | 11972 | ||||
| yk377d10 | 10166 | 11944 | ||||
| PCR_product (52) | ||||||
| Allele (358) | ||||||
| Oligo_set | Aff_B0393.1 | 2151 | 1458 | |||
| Aff_B0393.2 | 4463 | 5188 | ||||
| Aff_B0393.3 | 7306 | 7952 | ||||
| Aff_B0393.4 | 9550 | 8211 | ||||
| Aff_B0393.5 | 21897 | 24499 | ||||
| Aff_B0393.6 | 29552 | 28815 | ||||
| Aff_B0393.7 | 26407 | 25240 | ||||
| Feature_object (355) | ||||||
| Feature_data | B0393:Polysome | 1 | 30848 | |||
| B0393:TranscriptionallyActiveRegion | 1 | 30848 | ||||
| B0393:ChIPSeqTF | 1 | 30848 | ||||
| B0393:TRF | 1 | 30848 | ||||
| B0393:Dust | 1 | 30848 | ||||
| B0393:inverted | 1 | 30848 | ||||
| Homol_data (21) | ||||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | C38D4 | 30745 | ||||
| Overlap_left | VB0393L | |||||
| Clone_left_end | B0393 | 1 | ||||
| C38D4 | 30745 | |||||
| Clone_right_end | F17C8 | 7763 | ||||
| DB_info | Database | EMBL | NDB_AC | Z37983 | ||
| NDB_SV | Z37983.4 | |||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 10079 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Sulston JE | ||||
| From_laboratory | HX | |||||
| Date_directory | 991021 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | B0393 | ||||
| Remark | There is a problem with the overlapping region between F17C8 and B0393. Possibly due to strain differences or by a cosmid rearrangment. Thus the overlapping regions cannot be aligned. | |||||
| [991027 dl] : removed ambiquous bases | ||||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | cd8ef64c522df6bbf8409ed994b5d558 | ||||
| Status | Finished | 29 Apr 1994 00:00:00 | ||||
| Submitted | 30 Sep 1994 00:00:00 | |||||
| Annotated | 29 Sep 1994 00:00:00 | |||||
| Map | Sequence-III | Ends | Left | 2279 | ||
| Right | 2297 | |||||
| Interpolated_map_position | III | -2.56592 | ||||
| Assembly_tags | Clone left end | 1 | 4 | B0393 | ||
| 30745 | 30748 | C38D4 | ||||
| annotation | 1211 | 1204 | leftward, diverges fron F17C8 | |||
| 7757 | 7761 | F17C8 right | ||||
| 7761 | 7757 | F17C8 right | ||||
| 17213 | 17213 | G deleted in this subclone | ||||
| Finished Left | 1 | 4 | B0393 | |||
| Finished Right | 30845 | 30848 | B0393 | |||
| Method | Genomic_canonical |
