WormBase Tree Display for Sequence: F08G5
expand all nodes | collapse all nodes | view schema
F08G5 | DNA | F08G5 | 32782 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (24) | ||||
CDS_child (233) | ||||||
Transcript | F08G5.5b | 18988 | 26270 | |||
F08G5.8 | 17455 | 17435 | ||||
F08G5.9 | 8146 | 8294 | ||||
F08G5.10 | 23484 | 23571 | ||||
F08G5.11 | 13218 | 13362 | ||||
F08G5.12 | 23571 | 23484 | ||||
F08G5.13 | 19261 | 19399 | ||||
F08G5.14 | 19479 | 19282 | ||||
F08G5.15 | 10683 | 10778 | ||||
F08G5.16 | 10322 | 10465 | ||||
F08G5.17 | 20284 | 20417 | ||||
F08G5.18 | 11673 | 11762 | ||||
F08G5.19 | 20479 | 20284 | ||||
F08G5.20 | 12322 | 12177 | ||||
F08G5.21 | 10933 | 11084 | ||||
F08G5.t1 | 11757 | 11685 | ||||
F08G5.t2 | 11079 | 11008 | ||||
F08G5.t3 | 10772 | 10701 | ||||
F08G5.1a.1 | 2684 | 4229 | ||||
F08G5.1b.1 | 2838 | 4101 | ||||
F08G5.1c.1 | 2986 | 4229 | ||||
F08G5.2a.1 | 4226 | 5982 | ||||
F08G5.2b.1 | 5613 | 5943 | ||||
F08G5.3a.1 | 11339 | 6682 | ||||
F08G5.3b.1 | 8540 | 6682 | ||||
F08G5.3c.1 | 8473 | 6682 | ||||
F08G5.3d.1 | 11345 | 6680 | ||||
F08G5.4.1 | 22275 | 21264 | ||||
F08G5.5a.1 | 18976 | 26298 | ||||
F08G5.5a.2 | 14442 | 26395 | ||||
F08G5.5a.3 | 14486 | 26395 | ||||
F08G5.5c.1 | 26193 | 26270 | ||||
F08G5.6.1 | 29592 | 31995 | ||||
F08G5.7.1 | 26399 | 28794 | ||||
Nongenomic | yk173e12 | 145 | 2375 | |||
yk204e8 | 21265 | 21564 | ||||
PCR_product (22) | ||||||
Allele (557) | ||||||
Oligo_set (7) | ||||||
Feature_object (254) | ||||||
Feature_data | F08G5:Polysome | 1 | 32782 | |||
F08G5:TranscriptionallyActiveRegion | 1 | 32782 | ||||
F08G5:ChIPSeqTF | 1 | 32782 | ||||
F08G5:TRF | 1 | 32782 | ||||
F08G5:Dust | 1 | 32782 | ||||
F08G5:inverted | 1 | 32782 | ||||
Homol_data (19) | ||||||
Structure | From | Source | CHROMOSOME_IV | |||
Overlap_right | C25G4 | 32678 | ||||
Overlap_left | F28D1 | |||||
Clone_left_end | F08G5 | 1 | ||||
C26C6 | 32678 | |||||
Clone_right_end | F28D1 | 725 | ||||
DB_info | Database | EMBL | NDB_AC | Z70682 | ||
NDB_SV | Z70682.3 | |||||
DB_remark | [100415] Sequence correction: deletion -1 bases atgcttggTactggatt @ 27377 | |||||
[121025] Sequence correction WBsf268126 : Deletion C-1 bases @ 10138 | ||||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Steward CA | ||||
From_laboratory | HX | |||||
Date_directory | 100415 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | F08G5 | ||||
Reference | WBPaper00015325 | |||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | d82d3f0ca10fba7f4303d1638f658e0f | ||||
Status | Finished | 26 Feb 1996 00:00:00 | ||||
Submitted | 06 Apr 1996 00:00:00 | |||||
Annotated | 02 Apr 1996 00:00:00 | |||||
Map | Sequence-IV | Ends | Left | 6441 | ||
Right | 6458 | |||||
Interpolated_map_position | IV | 5.91834 | ||||
Assembly_tags | Clone left end | 1 | 4 | F08G5 | ||
32678 | 32681 | C25G4 | ||||
Finished Left | 1 | 1 | ||||
Clone right end | 722 | 725 | F28D1 | |||
annotation | 24191 | 24193 | best-guess editing due to unclear sequence as a result of an inverted repeat. All subsequent ?annotation? tags over the next 100 bases mark similarly unclear calls | |||
24195 | 24197 | |||||
24324 | 24324 | last unclear base. All calls after this region are fine | ||||
24234 | 24238 | |||||
24260 | 24262 | |||||
24253 | 24253 | |||||
24263 | 24270 | |||||
Finished Right | 32782 | 32782 | ||||
Method | Genomic_canonical |