WormBase Tree Display for Sequence: F01D5
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| F01D5 | DNA | F01D5 | 36127 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (14) | ||||
| CDS_child (225) | ||||||
| Transcript (16) | ||||||
| Pseudogene | F01D5.4 | 6080 | 5425 | |||
| F01D5.11 | 446 | 921 | ||||
| Genomic_non_canonical | WRM0625cF06 | 1657 | 31878 | |||
| Nongenomic | yk298a5 | 2071 | 2608 | |||
| yk147c9 | 18879 | 20034 | ||||
| PCR_product (45) | ||||||
| Allele (893) | ||||||
| Oligo_set | Aff_F01D5.1 | 2616 | 2020 | |||
| Aff_F01D5.10 | 24400 | 23010 | ||||
| Aff_F01D5.11 | 446 | 921 | ||||
| Aff_F01D5.2 | 3994 | 3542 | ||||
| Aff_F01D5.3 | 5074 | 4251 | ||||
| Aff_F01D5.5 | 7336 | 6791 | ||||
| Aff_F01D5.6 | 12743 | 13516 | ||||
| Aff_F01D5.7 | 14533 | 15622 | ||||
| Aff_F01D5.8 | 18022 | 18801 | ||||
| Aff_F01D5.9 | 20007 | 18899 | ||||
| Feature_object (300) | ||||||
| Feature_data | F01D5:Polysome | 1 | 36127 | |||
| F01D5:TranscriptionallyActiveRegion | 1 | 36127 | ||||
| F01D5:ChIPSeqTF | 1 | 36127 | ||||
| F01D5:TRF | 1 | 36127 | ||||
| F01D5:Dust | 1 | 36127 | ||||
| F01D5:inverted | 1 | 36127 | ||||
| Homol_data (21) | ||||||
| Structure | From | Source | CHROMOSOME_II | |||
| Overlap_right | W01G7 | 36028 | ||||
| Overlap_left | Y39G8B | |||||
| Clone_left_end (2) | ||||||
| DB_info | Database | EMBL | NDB_AC | Z81493 | ||
| NDB_SV | Z81493.1 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Lloyd CR | ||||
| From_laboratory | HX | |||||
| Date_directory | 980618 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | F01D5 | ||||
| Properties (3) | ||||||
| Map | Sequence-II | Ends | Left | 8026 | ||
| Right | 8054 | |||||
| Interpolated_map_position | II | 22.1623 | ||||
| Assembly_tags | Finished Left | 1 | 4 | F01D5 | ||
| Clone left end | 1 | 4 | F01D5 | |||
| 36031 | 36028 | W01G7 | ||||
| annotation | 16193 | 16193 | [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Comment One clone reads C, 7 clones read T. | |||
| 26380 | 26386 | [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other CommentRegion covered by one pUC clone from a short insert library derived from a 5kbXHOI restriction fragment. The short insert reads have assembled into a 5kbregion of the cosmid between two XHOI sites. | ||||
| 24619 | 25069 | [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Comment Region of 22bp tandem repeat. Restriction digest data (HINDIII, ECORI, BAMHI) suggest there are approximately 600bp missing from this assembly. | ||||
| Finished Right | 36124 | 36127 | F01D5 | |||
| Method | Genomic_canonical |
