WormBase Tree Display for Sequence: F08G5
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| F08G5 | DNA | F08G5 | 32782 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (24) | ||||
| CDS_child (233) | ||||||
| Transcript (34) | ||||||
| Nongenomic | yk173e12 | 145 | 2375 | |||
| yk204e8 | 21265 | 21564 | ||||
| PCR_product | cenix:135-e2 | 21989 | 22496 | |||
| cenix:138-c12 | 331 | 1502 | ||||
| cenix:146-f11 | 2846 | 4029 | ||||
| cenix:160-f2 | 30117 | 30910 | ||||
| cenix:40-f6 | 27529 | 28113 | ||||
| cenix:49-d10 | 6711 | 9146 | ||||
| cenix:94-f1 | 4550 | 6054 | ||||
| mv_F08G5.1 | 2839 | 4099 | ||||
| mv_F08G5.2 | 4264 | 5941 | ||||
| mv_F08G5.3 | 6850 | 8472 | ||||
| mv_F08G5.4 | 21307 | 22255 | ||||
| mv_F08G5.5 | 23649 | 28758 | ||||
| mv_F08G5.6 | 29611 | 31947 | ||||
| p_F08G5.1_93 | 2198 | 2837 | ||||
| p_F08G5.2_93 | 3963 | 4262 | ||||
| sjj_F08G5.1 | 3123 | 4055 | ||||
| sjj_F08G5.2 | 4951 | 6054 | ||||
| sjj_F08G5.3 | 6718 | 8967 | ||||
| sjj_F08G5.4 | 21383 | 22496 | ||||
| sjj_F08G5.5 | 26937 | 28113 | ||||
| sjj_F08G5.6 | 29507 | 31105 | ||||
| sjj_F28D1.10 | 1152 | 2193 | ||||
| Allele (557) | ||||||
| Oligo_set | Aff_F08G5.1 | 3394 | 4101 | |||
| Aff_F08G5.2 | 5100 | 5943 | ||||
| Aff_F08G5.3 | 8473 | 6848 | ||||
| Aff_F08G5.4 | 21905 | 21306 | ||||
| Aff_F08G5.5 | 27655 | 28762 | ||||
| Aff_F08G5.6 | 30240 | 31951 | ||||
| Aff_F28D1.10 | 1502 | 2199 | ||||
| Feature_object (254) | ||||||
| Feature_data | F08G5:Polysome | 1 | 32782 | |||
| F08G5:TranscriptionallyActiveRegion | 1 | 32782 | ||||
| F08G5:ChIPSeqTF | 1 | 32782 | ||||
| F08G5:TRF | 1 | 32782 | ||||
| F08G5:Dust | 1 | 32782 | ||||
| F08G5:inverted | 1 | 32782 | ||||
| Homol_data (19) | ||||||
| Structure | From | Source | CHROMOSOME_IV | |||
| Overlap_right | C25G4 | 32678 | ||||
| Overlap_left | F28D1 | |||||
| Clone_left_end | F08G5 | 1 | ||||
| C26C6 | 32678 | |||||
| Clone_right_end | F28D1 | 725 | ||||
| DB_info | Database | EMBL | NDB_AC | Z70682 | ||
| NDB_SV | Z70682.3 | |||||
| DB_remark | [100415] Sequence correction: deletion -1 bases atgcttggTactggatt @ 27377 | |||||
| [121025] Sequence correction WBsf268126 : Deletion C-1 bases @ 10138 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Steward CA | ||||
| From_laboratory | HX | |||||
| Date_directory | 100415 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | F08G5 | ||||
| Reference | WBPaper00015325 | |||||
| Properties (3) | ||||||
| Map | Sequence-IV | Ends | Left | 6441 | ||
| Right | 6458 | |||||
| Interpolated_map_position | IV | 5.91834 | ||||
| Assembly_tags | Clone left end | 1 | 4 | F08G5 | ||
| 32678 | 32681 | C25G4 | ||||
| Finished Left | 1 | 1 | ||||
| Clone right end | 722 | 725 | F28D1 | |||
| annotation | 24191 | 24193 | best-guess editing due to unclear sequence as a result of an inverted repeat. All subsequent ?annotation? tags over the next 100 bases mark similarly unclear calls | |||
| 24195 | 24197 | |||||
| 24324 | 24324 | last unclear base. All calls after this region are fine | ||||
| 24234 | 24238 | |||||
| 24260 | 24262 | |||||
| 24253 | 24253 | |||||
| 24263 | 24270 | |||||
| Finished Right | 32782 | 32782 | ||||
| Method | Genomic_canonical |
