WormBase Tree Display for Sequence: T01D3
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T01D3 | DNA | T01D3 | 28416 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child | WBGene00169817 | 19651 | 19631 | |
WBGene00011328 | 12711 | 19531 | ||||
WBGene00011329 | 23713 | 21430 | ||||
WBGene00005987 | 19800 | 21459 | ||||
WBGene00198231 | 12533 | 12586 | ||||
WBGene00011327 | 15835 | 14407 | ||||
CDS_child (226) | ||||||
Transcript (9) | ||||||
Nongenomic | yk273e12 | 21534 | 23702 | |||
PCR_product (18) | ||||||
Allele (397) | ||||||
Oligo_set | Aff_T01D3.1 | 11084 | 11683 | |||
Aff_T01D3.2 | 15331 | 14426 | ||||
Aff_T01D3.3A | 18579 | 19402 | ||||
Aff_T01D3.4 | 20513 | 21610 | ||||
Aff_T01D3.5 | 23000 | 21718 | ||||
Aff_T01D3.6 | 28009 | 28727 | ||||
Feature_object (165) | ||||||
Feature_data | T01D3:Polysome | 1 | 28416 | |||
T01D3:TranscriptionallyActiveRegion | 1 | 28416 | ||||
T01D3:ChIPSeqTF | 1 | 28416 | ||||
T01D3:TRF | 1 | 28416 | ||||
T01D3:Dust | 1 | 28416 | ||||
T01D3:inverted | 1 | 28416 | ||||
Homol_data | T01D3:RNAi | 1 | 28416 | |||
T01D3:SAGE | 1 | 28416 | ||||
T01D3:Mass-spec | 1 | 28416 | ||||
T01D3:Expr | 1 | 28416 | ||||
T01D3:TEC_RED | 1 | 28416 | ||||
T01D3:wublastx_brenneri | 1 | 28416 | ||||
T01D3:wublastx_briggsae | 1 | 28416 | ||||
T01D3:wublastx_brugia | 1 | 28416 | ||||
T01D3:wublastx_fly | 1 | 28416 | ||||
T01D3:wublastx_human | 1 | 28416 | ||||
T01D3:wublastx_japonica | 1 | 28416 | ||||
T01D3:wublastx_ovolvulus | 1 | 28416 | ||||
T01D3:wublastx_pristionchus | 1 | 28416 | ||||
T01D3:wublastx_remanei | 1 | 28416 | ||||
T01D3:wublastx_slimSwissProt | 1 | 28416 | ||||
T01D3:wublastx_sratti | 1 | 28416 | ||||
T01D3:wublastx_tmuris | 1 | 28416 | ||||
T01D3:wublastx_worm | 1 | 28416 | ||||
T01D3:RepeatMasker | 1 | 28416 | ||||
Structure | From | Source | CHROMOSOME_V | |||
Overlap_right | F35E12 | 28316 | ||||
Overlap_left | F58G11 | |||||
Clone_left_end | T01D3 | 1 | ||||
F35E12 | 28316 | |||||
Clone_right_end | F58G11 | 7451 | ||||
DB_info | Database | EMBL | NDB_AC | Z81110 | ||
NDB_SV | Z81110.2 | |||||
DB_remark | [121025] Sequence correction: SNP 0 bases @ 25629 | |||||
[121025] Sequence correction WBsf267807 : Insertion G1 bases from @ 15199 | ||||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Steward CA | ||||
From_laboratory | HX | |||||
Date_directory | 960603 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | T01D3 | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | db0a01fa8f3e62cbc3ff2d158d7f6cd3 | ||||
Status | Finished | 03 Jun 1996 00:00:00 | ||||
Submitted | 21 Oct 1996 00:00:00 | |||||
Annotated | 17 Feb 1997 00:00:00 | |||||
Map | Sequence-V | Ends | Left | 7784 | ||
Right | 7813 | |||||
Interpolated_map_position | V | 5.58448 | ||||
Assembly_tags | Finished Left | 1 | 1 | |||
Clone left end | 1 | 4 | ||||
28316 | 28319 | F35E12 | ||||
Clone right end | 7448 | 7451 | F58G11 | |||
Finished Right | 28416 | 28416 | ||||
annotation | 24311 | 24321 | single read only in loop of inverted repeat | |||
24322 | 24335 | region within loop of inverted repeat. Covered by 2 reads, but data is not 100 %, although we feel that this sequence is correct. | ||||
Method | Genomic_canonical |