WormBase Tree Display for Sequence: K09F5

K09F5 DNA: K09F5 39377
  SMap: S_child: Gene_child (15)
      CDS_child: K09F5.1:wp265 35303 37556
        K09F5.1a 35303 36744
        K09F5.1b 35303 36744
        K09F5.2 23551 28593
        K09F5.3 21630 21990
        K09F5.3a:wp152 15133 21990
        K09F5.3b:wp152 15133 20698
        K09F5.3c:wp152 21630 21990
        K09F5.4 6393 6082
        K09F5.4:wp272 6366 5820
        K09F5.5 31798 29258
        K09F5.5:wp108 31798 28961
        K09F5.6a 15133 20698
        K09F5.6b 15133 20259
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g9_x16_X_p 24355 25126
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g45n11_x16_X_p 15133 16304
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g55_x16_X_p 17401 20256
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g88_x16_X_p 21559 21785
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g72_x16_X_m 31798 29514
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g60_x16_X_p 20687 20695
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g1n11_x16_X_p 21630 21987
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g19_x16_X_p 27437 28590
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g15n11_x16_X_p 21630 21987
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g59_x16_X_p 18199 20256
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g70n11_x16_X_p 15133 18067
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g1n11_x16_X_p 21630 21987
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g54n11_x16_X_p 15133 20695
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g55n11_x16_X_p 19897 20256
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g147_x16_X_p 16291 17281
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g1n11_x16_X_p 21630 21987
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g119_x16_X_p 19601 19953
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g51_x16_X_p 21559 21785
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g47_x16_X_p 18501 19594
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g54_x16_X_p 15835 16280
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g148_x16_X_p 13473 13652
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g53n11_x16_X_p 23068 23290
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g79_x16_X_p 25814 26048
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g72_x16_X_m 30345 29862
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g95_x16_X_p 25350 25529
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g101_x16_X_p 33533 33731
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g57_x16_X_p 23575 23903
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g22n11_x16_X_m 12550 12479
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g98_x16_X_m 28002 27526
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g4n11_x16_X_m 11051 7881
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g75_x16_X_p 33321 33529
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g67_x16_X_p 33735 33888
        RNASEQ_embryo_him-8_20dC_post-L1_g38n11s9k79_x16_X_p 19319 19521
        RNASEQ_embryo_him-8_20dC_post-L1_g38n11_x16_X_p 19400 19521
        RNASEQ_embryo_him-8_20dC_post-L1_g20n11_x16_X_p 21630 21987
        RNASEQ_embryo_him-8_20dC_post-L1_g110_x16_X_m 29325 29036
        RNASEQ_embryo_him-8_20dC_post-L1_g41n11_x16_X_p 20687 20695
        RNASEQ_embryo_him-8_20dC_post-L1_g35n11_x16_X_p 15133 20256
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g97_x16_X_p 15835 17334
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g48_x16_X_p 27749 28590
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g204_x16_X_m 31789 31724
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g179_x16_X_m 29325 29226
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g72_x16_X_p 17921 20052
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g10_x16_X_p 24355 25126
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g94_x16_X_p 20183 20721
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g75_x16_X_p 20687 20695
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g175_x16_X_p 35819 35932
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g1n11_x16_X_p 21630 21987
        RNASEQ_L4_soma_JK1107_no_DNaseI_g1n11_x16_X_p 21630 21987
        RNASEQ_L4_soma_JK1107_no_DNaseI_g71n11_x16_X_p 15133 15849
        RNASEQ_L4_soma_JK1107_no_DNaseI_g215_x16_X_p 24818 25054
        RNASEQ_L4_soma_JK1107_no_DNaseI_g103_x16_X_p 19343 20695
        RNASEQ_L4_soma_JK1107_no_DNaseI_g109_x16_X_p 24379 24499
        RNASEQ_L4_soma_JK1107_no_DNaseI_g217_x16_X_p 27984 28150
        RNASEQ_L4_soma_JK1107_no_DNaseI_g114_x16_X_p 18396 18898
        RNASEQ_L4_soma_JK1107_no_DNaseI_g104_x16_X_p 19897 20121
        RNASEQ_L4_soma_JK1107_no_DNaseI_g124_x16_X_p 18905 19339
        RNASEQ_L4_soma_JK1107_no_DNaseI_g131_x16_X_p 28223 28375
        RNASEQ_L4_soma_JK1107_no_DNaseI_g180_x16_X_p 16169 16243
        RNASEQ_L4_soma_JK1107_no_DNaseI_g160_x16_X_p 16269 17316
        RNASEQ_L4_soma_JK1107_no_DNaseI_g157_x16_X_p 18086 18145
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g33n11_x16_X_p 15133 20256
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g143_x16_X_m 29407 29354
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g70n11_x16_X_p 20687 20695
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g103_x16_X_m 29026 28973
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g1n11_x16_X_p 21630 21987
        RNASEQ_early_embryo_g21n11_x16_X_p 19897 20256
        RNASEQ_early_embryo_g33n11_x16_X_p 19322 19521
        RNASEQ_early_embryo_g37n11_x16_X_p 21630 21987
        RNASEQ_early_embryo_g21n11s11k98_x16_X_p 19879 20256
        RNASEQ_early_embryo_g20n11s9k91_x16_X_p 19307 19521
        RNASEQ_early_embryo_g20n11_x16_X_p 15133 20695
        RNASEQ_early_embryo_g61n11_x16_X_m 31798 29261
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11e9k154_x16_X_p 18626 18982
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g105_x16_X_m 30197 30126
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11s9k93_x16_X_p 19307 19521
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g117_x16_X_m 29744 29463
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11_x16_X_p 15133 20695
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11m11_x16_X_p 19576 19783
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g13n11_x16_X_p 21630 21987
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g18n11_x16_X_p 19897 20256
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g26n11_x16_X_p 19322 19521
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g48n11_x16_X_p 15133 20256
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g49n11s9k99_x16_X_p 19301 19521
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g49n11_x16_X_p 19400 20695
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g1n11_x16_X_p 21630 21987
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g27n11_x16_X_p 15133 20256
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g41n11s1k51_x16_X_p 20687 20695
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g27n11s1k51_x16_X_p 15079 15236
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g114_x16_X_p 28195 28284
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g27n11e11k88_x16_X_p 19576 19783
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g1n11_x16t1_X_p 21630 21987
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g92_x16_X_p 24818 25114
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g2n11_x16_X_p 21630 21987
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g102_x16_X_p 15133 20695
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g69_x16t1_X_p 28156 28590
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g71_x16_X_p 24355 24499
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g74_x16_X_p 19897 20256
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g65_x16_X_p 27984 28150
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g145_x16_X_p 18519 18688
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g62_x16_X_p 24818 25111
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g21_x16_X_p 24355 24502
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g103_x16_X_p 17689 17830
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g65_x16_X_p 27944 28590
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g123_x16_X_p 17368 17424
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g128_x16_X_p 19647 20723
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g195_x16_X_p 16169 16273
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g143_x16_X_p 18050 18395
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g108_x16_X_p 15133 15903
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g129_x16_X_p 19580 19923
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g1n11_x16_X_p 21630 21987
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g77_x16_X_p 21559 21785
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g23n11_x16_X_p 15133 20256
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g108_x16_X_p 24818 25132
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g35n11_x16_X_m 31798 31724
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g29_x16_X_p 24355 24565
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g1n11_x16_X_p 21630 21987
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g26_x16_X_p 27914 28590
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g71_x16_X_m 30197 29261
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g28_x16_X_p 24355 24505
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g85_x16_X_m 31798 30156
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g99_x16_X_m 29399 29328
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g88_x16_X_p 24599 25129
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g1n11_x16_X_p 21630 21987
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g54_x16_X_p 27908 28590
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g109_x16_X_m 29744 29469
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g181_x16_X_m 29273 29217
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g20n11_x16_X_p 15133 20256
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g48n11_x16_X_p 16269 16308
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g87_x16_X_p 19647 20783
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g160_x16_X_m 31724 31152
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g109_x16_X_m 30197 29577
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g88_x16_X_p 19574 20256
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g1n11_x16_X_p 21630 21987
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g11_x16_X_p 27749 28590
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g144_x16_X_m 31135 30510
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g36n11_x16_X_p 15133 18025
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g69_x16_X_p 18050 19519
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g89_x16_X_p 24818 25126
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g10_x16_X_p 24355 24502
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g160_x16_X_p 24599 25117
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g93n11_x16_X_p 20687 20695
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g156_x16_X_m 29513 29394
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g62_x16_X_p 24355 24502
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g1n11_x16_X_p 21630 21987
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g31n11_x16_X_p 15133 20256
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g105_x16_X_p 27941 28590
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g181_x16_X_m 29271 29076
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g117_x16_X_m 31798 30537
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g133_x16_X_p 18220 18276
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g121_x16_X_p 17689 17923
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g157_x16_X_p 19751 20091
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g2_x16_X_p 24355 25141
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g4_x16_X_p 27437 28590
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g138_x16_X_p 18396 18694
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g174_x16_X_p 19520 19663
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g1n11_x16_X_p 21630 21987
        K09F5.gc1 15133 20786
        K09F5.gc2 21630 21990
        K09F5.gc3 23551 28593
        K09F5.gc4 31798 28961
        K09F5.gc5 35303 36744
        ContigX.elegans.jigsaw.1218.mRNA1218 21538 22037
        ContigX.elegans.jigsaw.1221.mRNA1221 35294 36829
        ContigX.elegans.jigsaw.1219.mRNA1219 22744 28816
        ContigX.elegans.jigsaw.1217.mRNA1217 15126 21270
        ContigX.elegans.jigsaw.1220.mRNA1220 31867 28971
        AG1201_K09F5.4.T1w 6366 5820
        AG1201_K09F5.6.T1 15070 20259
        AG1201_K09F5.6.T3 15133 19786
        AG1201_K09F5.6.T2 15133 20259
        AG1201_K09F5.6.T5 15133 20259
        AG1201_K09F5.6.T4 15133 20698
        AG1201_K09F5.3.T1 21559 21785
        AG1201_K09F5.3.T5 21559 21990
        AG1201_K09F5.3.T3 21630 21990
        AG1201_K09F5.3.T2 21708 21990
        AG1201_K09F5.2.T2 23551 28287
        AG1201_K09F5.2.T1 23551 28593
        AG1201_K09F5.2.T3 23551 28593
        AG1201_K09F5.5.T1 31798 29258
        AG1201_K09F5.5.T2 31798 29643
        AG1201_K09F5.1.T1 35303 36744
      Transcript (16)
      Nongenomic: yk277g12 21633 22044
        yk321c4 26076 28625
      PCR_product (18)
      Allele (663)
      Oligo_set (5)
      Feature_object (165)
      Feature_data: K09F5:Polysome 1 39377
        K09F5:TranscriptionallyActiveRegion 1 39377
        K09F5:ChIPSeqTF 1 39377
        K09F5:TRF 1 39377
        K09F5:Dust 1 39377
        K09F5:inverted 1 39377
      Homol_data (21)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: C47C12 39178
    Overlap_left: C53C9
    Clone_left_end: K09F5 1
      C47C12 28100
    Clone_right_end: C53C9 19457
      K09F5 39377
  DB_info: Database: EMBL NDB_AC FO080893
        NDB_ID _U37430
        NDB_SV FO080893.2
    Secondary_accession: U37430
    DB_remark: The 5' clone is C53C9, 3000 bp overlap; the 3' clone is C47C12, 200 bp overlap. Actual start of this clone is at base position 1 of K09F5; actual end is at 39377 of K09F5.
      [121025] Sequence correction: SNP 0 bases @ 24919
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Bentley D
    From_laboratory: RW
    Date: 21 Apr 1995 00:00:00
      16 Dec 1994 00:00:00
    Species: Caenorhabditis elegans
  Visible: Clone: K09F5
    Remark: change the T at 27178 to a C; checked by finisher - 01-10-18 js
  Properties: Genomic_canonical
    Checksum: MD5: a14f307a54949263a8031823217ddfd5
    Status: Finished
      Submitted: 21 Apr 1995 00:00:00
  Map: Sequence-X
  Interpolated_map_position: X -1.33382
  Method: Genomic_canonical