WormBase Tree Display for Sequence: F54E2

F54E2 DNA: F54E2 37005
  SMap: S_child: Gene_child: WBGene00268206 31992 30443
        WBGene00018825 34061 32129
        WBGene00018823 28403 30022
        WBGene00236799 20078 20879
        WBGene00018824 14303 15071
        WBGene00018826 36222 34888
        WBGene00219966 12370 12321
      CDS_child: F54E2.1 28495 29958
        F54E2.2 14303 14934
        F54E2.3a 18225 583
        F54E2.3a:wp143 19032 583
        F54E2.3a:wp176 25865 583
        F54E2.3a:wp240 19032 583
        F54E2.3b:wp240 17818 841
        F54E2.3b:wp274 17818 841
        F54E2.3c 18225 583
        F54E2.3c:wp240 19032 583
        F54E2.3d 18225 583
        F54E2.3d:wp240 19032 583
        F54E2.3e 25865 583
        F54E2.3f 25865 583
        F54E2.3g 25865 583
        F54E2.3h 25865 583
        F54E2.3i 18225 583
        F54E2.3j 18225 583
        F54E2.3k 13942 583
        F54E2.3l 12349 583
        F54E2.4:wp19 25865 23973
        F54E2.4:wp240 25865 23973
        F54E2.5 33937 32257
        F54E2.5:wp230 33937 30536
        F54E2.5:wp250 33937 30536
        F54E2.6 36222 34888
        F54E2.9 31943 30536
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g30_x6_V_m 2460 2452
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g26n11_x6_V_m 18225 586
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g47_x6_V_m 25026 24835
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g50_x6_V_m 25157 25089
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g16_x6_V_p 28495 29940
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g56_x6_V_p 28955 29067
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g41_x6_V_m 25009 24839
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g28_x6_V_m 18225 586
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g66_x6_V_m 34953 34825
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g104_x6_V_m 24314 24243
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g2n11_x6_V_m 2963 2841
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g3n11e23k51_x6_V_m 2723 2452
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g5_x6_V_m 25286 2554
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g1n11e20k51_x6_V_m 975 844
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g75_x6_V_m 25350 25297
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g45_x6_V_p 28495 29229
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g66_x6_V_m 36012 35962
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g1n11_x6_V_m 18225 586
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g38_x6_V_m 10683 10529
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g41_x6_V_m 2218 2065
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g45_x6_V_m 12162 12103
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g40_x6_V_m 2869 2305
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g17_x6_V_p 28495 29949
        RNASEQ_embryo_him-8_20dC_post-L1_g6_x6_V_m 2963 2841
        RNASEQ_embryo_him-8_20dC_post-L1_g59_x6_V_m 24311 24243
        RNASEQ_embryo_him-8_20dC_post-L1_g21_x6_V_m 25286 24315
        RNASEQ_embryo_him-8_20dC_post-L1_g18_x6_V_p 14303 14931
        RNASEQ_embryo_him-8_20dC_post-L1_g5e9k269_x6_V_m 16014 14996
        RNASEQ_embryo_him-8_20dC_post-L1_g7_x6_V_m 2723 2452
        RNASEQ_embryo_him-8_20dC_post-L1_g5_x6_V_m 18225 586
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g3_x6_V_p 28495 29955
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g69_x6_V_m 25855 25397
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g21n11_x6_V_m 2347 586
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g43_x6_V_m 25286 24357
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g64_x6_V_m 24345 24193
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g12n11_x6_V_m 18225 2700
        RNASEQ_L4_soma_JK1107_no_DNaseI_g34_x6_V_m 18225 17339
        RNASEQ_L4_soma_JK1107_no_DNaseI_g13_x6_V_p 28495 29955
        RNASEQ_L4_soma_JK1107_no_DNaseI_g26_x6_V_m 3457 586
        RNASEQ_L4_soma_JK1107_no_DNaseI_g66_x6_V_m 11974 11912
        RNASEQ_L4_soma_JK1107_no_DNaseI_g68_x6_V_m 11089 10855
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g22e10k66_x6_V_m 24146 14996
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g31_x6_V_m 18225 16598
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g23_x6_V_m 1257 849
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g22_x6_V_m 15322 586
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g15_x6_V_p 28495 29955
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g44_x6_V_m 18996 18874
        RNASEQ_early_embryo_g37_x6_V_p 28955 29292
        RNASEQ_early_embryo_g15n11_x6_V_m 25865 586
        RNASEQ_early_embryo_g60_x6_V_p 29449 29889
        RNASEQ_early_embryo_g15n11s16k213_x6_V_m 12349 12059
        RNASEQ_early_embryo_g15n11m28_x6_V_m 975 844
        RNASEQ_early_embryo_g15n11e13k270_x6_V_m 16014 14996
        RNASEQ_early_embryo_g1n11_x6_V_m 18225 18187
        RNASEQ_early_embryo_g17_x6_V_p 14303 14931
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11_x6t1_V_m 25865 586
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11e13k275_x6t1_V_m 16014 14996
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g30_x6_V_p 28955 29901
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11e21k243_x6t1_V_m 10627 2900
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g10_x6_V_p 14303 14931
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11e25k69_x6t1_V_m 2118 1354
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11m27_x6t1_V_m 975 844
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g17n11s16k229_x6t1_V_m 12349 12059
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g1n11_x6t1_V_m 2963 2841
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g10_x6t1_V_p 28495 29955
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g24n11_x6_V_m 18225 3059
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g25n11_x6_V_m 2963 2841
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g18_x6_V_m 1257 849
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g24n11s11k77_x6_V_m 12196 12059
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g17_x6_V_m 2460 586
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g13n11_x6_V_m 25865 2452
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g11n11_x6t1_V_m 1257 849
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g11n11e21k181_x6t1_V_m 975 844
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g10n11_x6t1_V_m 18225 586
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g7_x6_V_p 28495 29955
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g15_x6_V_m 25286 18187
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g16n11e18k57_x6_V_m 2118 1354
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g16n11_x6_V_m 2347 586
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g11n11_x6_V_m 18225 2841
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g3_x6_V_p 28495 29955
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g18_x6_V_m 2460 2452
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g12_x6t1_V_m 2347 586
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g5_x6_V_p 28495 29955
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g16n11_x6t1_V_m 18225 18187
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g11s16k78_x6_V_m 12196 12059
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g11_x6_V_m 25286 2841
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g49_x6_V_m 24189 24136
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g25_x6_V_p 28495 29949
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g17_x6_V_m 2723 2610
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g58_x6_V_m 25142 24876
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g13n11_x6_V_m 18225 2607
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g20n11_x6_V_m 2347 586
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g57_x6_V_p 14554 14673
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g54_x6_V_p 14794 14892
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g52_x6_V_m 25286 25122
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g22n11_x6_V_m 2347 586
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g10n11_x6_V_m 18225 2841
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g71_x6_V_m 2677 2544
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g24_x6_V_m 2460 2452
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g34_x6_V_p 28681 29955
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g38_x6_V_m 25007 24810
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g44_x6_V_m 16786 16586
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g64_x6_V_m 15124 14072
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g1_x6_V_p 28495 29955
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g40_x6_V_m 11089 10577
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g41_x6_V_m 2215 1585
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g58_x6_V_m 11974 11918
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g70_x6_V_m 25018 24860
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g47_x6_V_m 16093 15404
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g23_x6_V_m 18225 17105
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g37_x6_V_m 13649 13254
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g35_x6_V_m 3361 2237
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g38_x6_V_m 1560 847
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g59_x6_V_m 13876 13659
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g36n11_x6_V_m 20419 18931
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g30_x6_V_m 13708 13665
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g25_x6_V_m 2460 586
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g34_x6_V_m 11974 2841
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g27_x6_V_p 28495 29955
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g21n11_x6_V_m 18225 13662
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g51_x6_V_m 25004 24759
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g43_x6_V_m 24146 24063
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g6_x6t1_V_p 28495 29955
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g45_x6_V_m 25157 24828
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g21n11_x6_V_m 18225 2841
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g53_x6_V_m 25841 25326
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g19_x6t1_V_m 2460 586
        F54E2.gc1 14098 214
        F54E2.gc2 14303 14934
        F54E2.gc3 25865 15023
        F54E2.gc4 28639 30076
        F54E2.gc5 36222 30536
        R05D8.gc10 14303 14934
        R05D8.gc11 18996 15023
        ContigV.elegans.jigsaw.638.mRNA638 28383 30037
        ContigV.elegans.jigsaw.640.mRNA640 36252 34864
        ContigV.elegans.jigsaw.639.mRNA639 34002 32132
        AG1201_F54E2.3.T1 17818 583
        AG1201_F54E2.3.T10 17818 583
        AG1201_F54E2.3.T11 17818 583
        AG1201_F54E2.3.T12 17818 583
        AG1201_F54E2.3.T13 17818 583
        AG1201_F54E2.3.T2 17818 583
        AG1201_F54E2.3.T3 17818 583
        AG1201_F54E2.3.T4 17818 583
        AG1201_F54E2.3.T5 17818 583
        AG1201_F54E2.3.T7 18225 583
        AG1201_F54E2.3.T8 25286 583
        AG1201_F54E2.3.T6 25865 583
        AG1201_F54E2.2.T1 14303 14934
        AG1201_RIT5P.2275.T1 27581 27691
        AG1201_F54E2.1.T3 28495 29958
        AG1201_F54E2.1.T1 28639 29958
        AG1201_F54E2.5.T2 31943 30536
        AG1201_F54E2.5.T1 33937 32257
        AG1201_F54E2.6.T1 36222 34801
      Transcript (15)
      Transposon: WBTransposon00000385 36719 36254
      PCR_product (27)
      Allele (1075)
      Oligo_set: Aff_F54E2.1 29359 29958
        Aff_F54E2.4 24620 23973
        Aff_F54E2.5 31294 30536
        Aff_F54E2.6 35685 34888
      Feature_object (142)
      Feature_data: F54E2:Polysome 1 37005
        F54E2:TranscriptionallyActiveRegion 1 37005
        F54E2:ChIPSeqTF 1 37005
        F54E2:TRF 1 37005
        F54E2:Dust 1 37005
        F54E2:inverted 1 37005
      Homol_data (18)
  Structure: From: Source: CHROMOSOME_V
    Overlap_right: T03D3 36806
    Overlap_left: R05D8
    Clone_left_end: T03D3 36806
      F54E2 8301
    Clone_right_end: R05D8 11590
  DB_info: Database: EMBL NDB_AC FO081467
        NDB_ID _AF106579
        NDB_SV FO081467.1
    Secondary_accession: AF106579
    DB_remark: The 5' clone is R05D8, 19100 bp overlap; the 3' clone is T03D3, 200 bp overlap. Actual start of this clone is at base position 8301 of F54E2; actual end is at 7480 of T03D3.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Wohldmann P
      Bauer C
      Gillam B
    From_laboratory: RW
    Date: 29 Jul 1999 00:00:00
      09 Oct 1997 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: F54E2
    Expr_pattern: Expr979
      Expr980
    Remark: added 800 bp to the 5' end 011211 db
  Properties: Genomic_canonical
    Checksum: MD5: 6601b058ec825ab984d7465a44b8a32f
    Status: Shotgun
      Finished
      Submitted: 29 Jul 1999 00:00:00
  Map: Sequence-V
  Interpolated_map_position: V -13.0596
  Method: Genomic_canonical