WormBase Tree Display for Sequence: K09D9

K09D9 DNA: K09D9 37242
  SMap: S_child: Gene_child (14)
      CDS_child: K09D9.1 34397 35434
        K09D9.1:wp247 34397 35497
        K09D9.2 31942 33713
        K09D9.3 28781 29894
        K09D9.6 19763 21259
        K09D9.7 17520 19111
        K09D9.8 14860 16810
        K09D9.9 3432 1948
        K09D9.10 5231 4073
        K09D9.11:wp253 10758 6417
        K09D9.12:wp225 14476 11620
        K09D9.12:wp245 13191 11620
        K09D9.13 26373 28319
        K09D9.13:wp225 26373 28319
        K09D9.14 31169 30021
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g54_x9_V_p 31942 33710
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g86_x9_V_m 12192 11752
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g85_x9_V_m 12417 12253
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g88_x9_V_p 34713 34989
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g89_x9_V_m 13191 12830
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g97_x9_V_m 12096 11833
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g49_x8_V_m 3235 1987
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g83_x9_V_m 10837 10688
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g122_x9_V_m 9514 9326
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g97_x9_V_p 32033 32217
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g98_x9_V_p 32295 32726
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g115_x9_V_p 32964 33115
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g57_x8_V_m 8520 6453
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g78_x9_V_p 34397 35431
        RNASEQ_L4_soma_JK1107_no_DNaseI_g56_x9_V_p 31942 32591
        RNASEQ_L4_soma_JK1107_no_DNaseI_g81_x9_V_p 34750 34930
        RNASEQ_L4_soma_JK1107_no_DNaseI_g62m1_x9_V_p 35404 35478
        RNASEQ_L4_soma_JK1107_no_DNaseI_g72_x9_V_p 32778 33133
        RNASEQ_L4_soma_JK1107_no_DNaseI_g98_x9_V_p 34397 34622
        RNASEQ_L4_soma_JK1107_no_DNaseI_g91_x9_V_p 33164 33689
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g112_x9_V_p 32400 32486
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g61_x9_V_p 34397 35431
        RNASEQ_early_embryo_g41_x9_V_p 32295 33689
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g91_x9_V_p 34912 35304
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g46_x9_V_p 31942 33157
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g62_x9_V_p 33164 33686
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g83_x9_V_p 34734 35310
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g27_x9_V_p 31942 33710
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g92_x9_V_p 34418 34514
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g62_x9_V_p 34575 35431
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g127_x9_V_p 34912 35052
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g29_x9_V_p 31942 33710
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g92_x8_V_m 9433 9338
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g99_x8_V_m 9049 8950
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g87_x8_V_m 8013 7056
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g27_x9_V_p 31942 33710
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g66_x9_V_m 10837 10638
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g159_x9_V_m 12928 12830
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g111_x9_V_p 32084 32205
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g95_x9_V_m 12330 12094
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g160_x9_V_m 12733 12523
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g78_x9_V_p 34397 34502
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g161_x9_V_m 12065 11886
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g123_x9_V_p 34524 34640
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g89_x9_V_p 35279 35396
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g87_x9_V_p 32093 32229
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g74_x9_V_m 12417 11782
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g81_x9_V_m 13191 12830
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g105_x9_V_p 34750 34797
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g56_x9_V_p 34397 35431
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g116_x9_V_m 13173 13069
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g74_x9_V_p 34734 35431
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g60_x9_V_p 34397 34721
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g59_x8_V_m 6818 6528
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g104_x9_V_m 13191 12830
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g52_x9_V_p 33164 33710
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g89_x9_V_m 12417 12118
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g106_x9_V_m 11871 11782
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g46_x9_V_p 31942 33154
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g96_x9_V_p 34393 34489
        K09D9.gc1 140 484
        K09D9.gc2 5231 1394
        K09D9.gc3 10758 6417
        K09D9.gc4 14476 11620
        K09D9.gc5 15564 21259
        K09D9.gc6 24880 26013
        K09D9.gc7 26373 29752
        K09D9.gc8 30974 29914
        K09D9.gc9 31942 33713
        K09D9.gc10 34397 35434
        ContigV.elegans.jigsaw.1002.mRNA1002 22458 26032
        ContigV.elegans.jigsaw.1005.mRNA1005 34048 35552
        ContigV.elegans.jigsaw.1004.mRNA1004 31808 33771
        ContigV.elegans.jigsaw.1003.mRNA1003 26328 28416
        ContigV.elegans.jigsaw.996.mRNA996 5407 3918
        ContigV.elegans.jigsaw.997.mRNA997 10827 6352
        ContigV.elegans.jigsaw.1001.mRNA1001 19718 21677
        ContigV.elegans.jigsaw.995.mRNA995 3440 1917
        ContigV.elegans.jigsaw.1000.mRNA1000 17458 19379
        ContigV.elegans.jigsaw.999.mRNA999 14818 16971
        ContigV.elegans.jigsaw.998.mRNA998 14547 11412
        AG1201_K09D9.9.T1 3432 1948
        AG1201_K09D9.10.T1 4966 4073
        AG1201_K09D9.11.T1 10239 6417
        AG1201_RIT5P.1730.T1 7083 7166
        AG1201_K09D9.12.T2 12417 11620
        AG1201_K09D9.12.T3 12417 11620
        AG1201_K09D9.12.T1 13191 12827
        AG1201_K09D9.8.T1 14860 16810
        AG1201_K09D9.7.T1 17520 19111
        AG1201_K09D9.6.T1 20529 21259
        AG1201_K09D9.4.T1p 24880 25603
        AG1201_K09D9.13.T1 26373 28319
        AG1201_K09D9.13.T2 27504 28319
        AG1201_K09D9.3.T1 29201 29894
        AG1201_K09D9.2.T1 31942 33713
        AG1201_K09D9.1.T2 34397 35434
        AG1201_K09D9.1.T1 34397 35497
      Transcript: K09D9.1.1 34340 35505
        K09D9.10.1 5231 4073
        K09D9.13.1 26373 28319
        K09D9.14.1 31169 29949
        K09D9.2.1 31902 33775
        K09D9.3.1 28781 29894
        K09D9.6.1 19763 21259
        K09D9.7.1 17520 19111
        K09D9.8.1 14812 16858
        K09D9.9.1 3441 1921
      Pseudogene: K09D9.4 24880 26231
        K09D9.5 22314 23921
        K09D9.11 10758 6417
        K09D9.12 13602 11620
      Genomic_non_canonical: WRM063aF01 1316 35599
      PCR_product (37)
      Allele (928)
      Oligo_set: Aff_K09D9.B 4795 3232
        Aff_K09D9.C 3130 1948
        Aff_K09D9.E 16052 16810
        Aff_K09D9.F 18051 18950
        Aff_K09D9.G 20209 21259
        Aff_K09D9.H 27714 28569
        Aff_K09D9.I 29168 29894
        Aff_K09D9.J 33068 33713
        Aff_K09D9.K 35074 36012
      Feature_object (69)
      Feature_data: K09D9:Polysome 1 37242
        K09D9:TranscriptionallyActiveRegion 1 37242
        K09D9:ChIPSeqTF 1 37242
        K09D9:TRF 1 37242
        K09D9:Dust 1 37242
        K09D9:inverted 1 37242
      Homol_data (18)
  Structure: From: Source: CHROMOSOME_V
    Overlap_right: C49G7 37043
    Overlap_left: B0213
    Clone_left_end: C49G7 26615
      K09D9 197
    Clone_right_end: B0213 4085
      K09D9 37046
  DB_info: Database: EMBL NDB_AC FO080122
        NDB_ID _AC006673
        NDB_SV FO080122.1
    Secondary_accession: AC006673
    DB_remark: The 5' clone is B0213, 500 bp overlap; the 3' clone is C49G7, 200 bp overlap. Actual start of this clone is at base position 197 of K09D9; actual end is at 37046 of K09D9.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Bradshaw H
      Beck C
    From_laboratory: RW
    Date: 14 Aug 1998 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: K09D9
    Remark: annotated 981207-js
  Properties: Genomic_canonical
    Checksum: MD5: fa75d829dea86eee048b326640fe0b5e
    Status: Shotgun
      Finished
      Submitted: 14 Aug 1998 00:00:00
  Map: Sequence-V
  Interpolated_map_position: V -7.05691
  Method: Genomic_canonical