WormBase Tree Display for RNAi: WBRNAi00098791
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| WBRNAi00098791 | Homol | Homol_homol | T05C12:RNAi | ||
|---|---|---|---|---|---|
| C27A2:RNAi | |||||
| Sequence_info | DNA_text | ATGACAGATTCCCCTTCACCAATTGATTCATCATTTGACGCATCAGATGTTGCCACGCCTTGCACAGTTATTGCCGCAAAAATTTCTCTGAGAAATCGAAATGGTCTTGAGGAAGATCAAGAAAATCTGGACAGCTTTGATGCTTTTACAGAAACACATGAAACACAGGAATCGAAAAATATCGCACATGGAGAGCATGAAGAAGATGTTTCTAACATTTATGTGGATGATTTTTCCAAAGAGTTTGGTGATACTGTTTCGTCAGTTATGGAGCCACTTCCTAAACCTCTTACATTTGCCAGGACCATTACAAAGGTTTACTGTCACTTGGACGATCAAGAACATCCTTACATGGTGGAAGTGCACGTACCACCTGATTGCATAACTTTGCGAGATGTCAAACGGAAGCTGATGAGAACAAATTTCAAGTATTATTGCATCGCGCTGGATCCTGATACTGGATTGGAAGTGAAAGCTGAAGTTCGTGACGATTCTCGACGGCTATATCCTTTGAAAAATGGACGATTCGAGTTGTATTTGCTTACCGTCGAGGGATCTGTGCACTCTGACACCAGCTCAGGAAGACATAGAAGGAAGCAAGACGGATCCTCGAAGGGAAGCAGTGGATCGAGAGAATATCTCAGAGCTGCCCATCATTACGATAATCCAACTCCATTTTCTGATGACGAATCTCAAGCATCATCTCTTCCGACTTATGTTAAAAAGGCGCATGCTTACAATAGAAAACATGCACCGCAAGCTTATGAACGTCACCTGCCCCACATGAAGCACAACAACCGCCACAATCACCATCGTCAAAATCATTATGAAGAATCCACATTCGATGTAACAACAGAGTCGGATGATCATTACCGAGACGGTGTCACATATTATGATGAAGATGAAGACGACAGCAGATCCATCAATACTGATTTAACGTCGGTTTCGCAAGTTCATTTGAAGCAAAAATGGCGTCAACAGCAAAAGGAAATGAGGAACAAGTGGAAACGAATGCCATCAATCTCGACGGCTTCATCTTCATTTTCAAGCATCACCGAATCGTCAATGGGTCTAGAAGTAATCACTGTTCGTTTGAACCTTGAAACAATACCACTTGGAATGACGCCTTCAGGACATACCAACGCTCGAGGAGATGCTGGTCTTTACGTTGGAGATATTCAGGATCGTGGAGCTGTTGCACTGGATGGTAGAATTGATATTGGAGATATGATCGTTGGAATCAATGAAATTAGTTTGGGAAATTACTCGAACAAGGAAGCAGTACAACTGTTACGAGAGGCAGTTCAGCGTCAATACTTGACATTGACGATTGCAAAAACTGGAGATCCAAAGCAAAATGCTTTTCCGAGAAATCCACGTGCAGAGCCAATTCGGCCAATTGATCCAAACGAATGGGTGAAGCATGCCACGAATGCTATGAAGGCAATGCCAAGTATATCTGAAGAAAGCTCGTCAACGCCCATTCCAGATGATTGGCCAACGAACAGTTCTGCGAGTGGAACTCCGTTTGGCGGGCCTCCGCCAGCTAACTGTTTGAACGTGATGACGGATAAGAAATATGTAGTAGAAGTAATGGCAGCTCCAGGATCAGGTCTTGACATCAAGGATCGTTACTGGTTTAAGATCCCAATCCCCATGTCTTTCTTGGGAACTGATCTAGTCGAGTGGCTTGTCAAGCATGTTCAAGGGCTTGAGACGAAGAAGAAAGCTCGTGAGTTTGCTGAGGAAATGTTGAAGCTTGGATACATCAGACCTGGAGTTGGAAAGCAGAGTTTTACGAAAGAATGCTACTACGTCATGGGAGATGAGTGTGCAGACTACACCCAACTGCGAGGACCTGACGGAGGATACAAGTATCCACAAAGTCACGCATCATCTGCGTCTGGTCATAGCAGCAACAATCTGATCTTCCCTCCATCAATGTACCCACCACAACCGCCAACAGCTGGCGCAGTGCAATCATCGAAATTCGGTCATTCTACCTTCTTCAATGACTGGCGGATACGCATCACTACCGGCGTCTCCATTTCCTCACGGAAAGGCATCTGTCAATGA | |||
| ATGGAGCCGCCATGCACATCAGACTGCAGCCAGATAAAAGTCTTCTACTATCTCGACGATGAAACGACTCCCTATGTTTCTGTTATTGAAGCCAGAGAAGGAGTAGCGACGCTTGGAAATTTCAAAAATTCATTCACCAAGCGTGGATATAAGTATTATGCGAAGGAACTTGACCCGGATATTCAACGAGAAGTTAAAGTCGAATTAACAACTGATTCGGATCGGCTGCGCAAATCCCAGAATGGATTTTATGAGATTTTTCTCGTTAGCACTCCAGGATATGGAACTCTTCCTCGAAACAGTGGAACAATGACGCGACCACAGAGAACTGCTCTAGATAAGCGCCGCCGACGAAGTGCAGACTTTGACGCGACTCCGTACTCTGATGCTAGTCTTGCTCCGAGCACCATTGTTAGCAGAAGAGCAGGAGAGCATCTGGCAGAATTATACACTTCAAATTCAGAGGATCCGTATCAATATGACGAGCATACACGTCGAACAGGAGATGATTCTTCGCTCTACGAACCTCTCGCTGCTCGTGATATGAATAAGATATACGATGACGATAGAAGAAGGAAAAAACAAAAGAAAGAAAGATTCAGAAGACCGTATGTTCCAAGTACTATTAGCTCAGCGACGGAATCAAGTGTTAACAGCGGCCTCCCTCGAATTCTGGAAATTTATCTACCAATGAAAAATGTTCCATATCTGGGACTGAGCGTGTGCACAATTGATGGTCATATATTCGTTTCCGAAATTGCACCAGAAGGTGCCGTTGAAAAAGATGGACGTGTGAACGTTGGTGATCAGATTCTTCAAGTTAATAGAGTATCCTTTGAAGAACTCAGTGGGCCTCAAGCAGTTCGTTCGCTCAGAGAAGCTGCATCCTCCAAAAGACCAATTACTCTTTATATCAGTAAGTTTGCAAGAGGTGCCCCAAGTGAATATGATGATCCACTCGCGTCCATGGCGTCTGAAACGATGCCCCTCGACGTTGGAGTTTGGGTAGAAACCGCTGTGCAGAACACTGAAAAAATGAAAGCTCTGGGTTTGGATCCACAGGAGCAAACGGCAACTACAATTGATGACGGAACTCTTCCATTTACATCGACAGCTTCTGATGATGAGGAGCGAATGCTTTACGATCAACGTAGAAATGGAATTCCAAGAGCTTTGATTGAAGAAGCAGAAAGAAAACGAGAAAATGAGCAAAATGAAAAAATAGAGCAACTCACAGAAATGATTGATCCCATTATTGTTGTTCGTTCTATGGCTCGTCCGGATTCAGGATTAGCTGTCAAAAATCGAAAATGGCTGAAAATTTTGGTTCCAATGTCTTTTATTGGCCGAGATCTAGTCGATTGGCTCGTTGATCACATGGCTGATATTCATAATCGGAAGAAAGCTAGAATCTATGCTGCGAGATTGTTAGCTGCTGGTCTTATCAGACATGTCGTCAGCAAGTTGACATTCACAGAAAAGTGCTACTATGTATTCGGTGATGGAATTCTTGGCAATGATCGTAATTCCACGGACACCACTGGTACGAGTGGAACTACAATGCGAGTTGAAGCAACTACTGAAGTGACGTATGTTGGCTCACCAGCACCACATGCTCTGGCAGCACGAGTTGGAAGAAATATTCCTCATCGATTAGAAACCACTACTCTAAGCCCAGTTGCTCATGACCAAACATGGCTTCGAAGACGTCGAGATTGTGAGAGTCCTATGACAAATGATTACGCATCGATGGTCGGAGAAAGCCAAATTGGAATGAATCCAGTCGGAAATTATCATGTTTTTGGGACGAAAAATAATCACCGTCAGGTACCGGCACCTTCTCAAGTGACATCCTCAAGCTTGACAAACGGAAGTGGTGGCTTAGGAGGCCCTCCGCCGACTCCTCTATCCAGTACTATGGTTCTAGCAGCTTCTCCGATTCAGTCGCAGAACGCAGTCAACCACGATTTCGACGGGGAGAACAGTAGCAACAGCAGAACGCGTATTTTACGGACTTAA | |||||
| Experiment | Laboratory | WM | |||
| Date | 25 Dec 2009 00:00:00 | ||||
| Genotype | nmy-2(ne3409) | ||||
| Temperature | 20 | ||||
| Inhibits | Predicted_gene | T05C12.6c | Inferred_automatically | RNAi_primary | |
| C27A2.6 | Inferred_automatically | RNAi_primary | |||
| T05C12.6b | Inferred_automatically | RNAi_primary | |||
| T05C12.6a | Inferred_automatically | RNAi_primary | |||
| Gene | WBGene00001102 | Inferred_automatically | RNAi_primary | ||
| WBGene00003241 | Inferred_automatically | RNAi_primary | |||
| Transcript | C27A2.6.1 | Inferred_automatically | RNAi_primary | ||
| T05C12.6b.1 | Inferred_automatically | RNAi_primary | |||
| T05C12.6a.1 | Inferred_automatically | RNAi_primary | |||
| T05C12.6c.1 | Inferred_automatically | RNAi_primary | |||
| Species | Caenorhabditis elegans | ||||
| Interaction | WBInteraction000521849 | ||||
| Reference | WBPaper00035593 | ||||
| Phenotype | WBPhenotype:0000708 | Remark | Enhanced endoderm-specification defects. With nmy-2(ne3409) the background, 40 percent of animals are lacking intestine compared to 3 percent with dsh-2; mig-5(RNAi)alone. | ||
| WBPhenotype:0001637 | Remark | Enhanced endoderm-specification defects. With nmy-2(ne3409) the background, 40 percent of animals are lacking intestine compared to 3 percent with dsh-2; mig-5(RNAi)alone. | |||
| Remark | Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation. Method of delivery not explicit, authors say injection or feeding. 20C is the semipermissive temp for nmy-2 allele used in this experiment. | ||||
| Method | RNAi |
