WormBase Tree Display for Pseudogene: Y26D4A.19b
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| Y26D4A.19b | Evidence | Inferred_automatically | make_isoforms.pl | ||
|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y26D4A | ||
| Structure | Source_exons | 1 | 83 | ||
| 227 | 394 | ||||
| 462 | 773 | ||||
| 821 | 892 | ||||
| DB_info | DB_remark | coding pseudogene | |||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Type | Coding_pseudogene | ||||
| Attributes | SubType | unprocessed_pseudogene | |||
| Properties | Isoform | From_analysis | RNASeq_Hillier_elegans | ||
| Visible | Gene | WBGene00045236 | |||
| Brief_identification | Curated pseudogene | ||||
| Corresponding_oligo_set | A_12_P144610 | ||||
| GPL19516_CGZ0043628 | |||||
| GPL19516_CGZ0043629 | |||||
| GPL21109_Y26D4A.19a | |||||
| GPL21109_Y26D4A.19b | |||||
| Variation (45) | |||||
| Microarray_results | A_12_P144610 | ||||
| GPL19516_CGZ0043628 | |||||
| GPL19516_CGZ0043629 | |||||
| GPL21109_Y26D4A.19a | |||||
| GPL21109_Y26D4A.19b | |||||
| RNASeq_FPKM (74) | |||||
| Last_reviewed | 26 Jul 2012 00:00:00 | WBPerson1983 | |||
| Remark | [120726 pad] This model belongs to a very complicated loci where it is difficult to fully model the transcript data as coding genes. The locus has been curated as a set of 3/2 coding genes and 2/3 pseudogenic loci. The common theme is that there appears to be 5 repeated sequences within the cluster and that there is light transcriptional activity connecting the loci and adding additional exon structures. One theory is that this is a cluster of 5 ncRNAs that get transcribed as a single unit and then post processed to produce active products. | Curator_confirmed | WBPerson1983 | ||
| From_analysis | RNASeq_Hillier_elegans | ||||
| Method | Pseudogene |
