WormBase Tree Display for Operon: CEOP4679
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| CEOP4679 | SMap | S_parent | Canonical_parent | CHROMOSOME_IV | |
|---|---|---|---|---|---|
| Species | Caenorhabditis elegans | ||||
| Contains_gene | WBGene00018319 | SL1 | Feature_evidence | WBsf021878 | |
| SL2 | Person_evidence | WBPerson71 | |||
| Curator_confirmed | WBPerson1983 | ||||
| Feature_evidence | WBsf022341 | ||||
| From_analysis | RNASeq_Hillier_elegans | ||||
| Description | C. elegans Alternative Operon - These exist as a single gene locus where SL2 Trans-splicing occurs at downstream exons in the gene. | ||||
| Method | operon | ||||
| History | Acquires_merge | CEOP4002 | |||
| Remark | [100615 pad] This appears to be a unique case where a single gene locus can be described as an operon. | Curator_confirmed | WBPerson1983 | ||
| [100615 pad] The ests and transcriptome data make it clear that there is an exon 9 skipping event that results in the whole thing being spliced together making one mRNA. Alternatively, exon 9 is included and 3' end formation occurs within it. Presumably accompanying this 3' end formation event, an SL2 trans-splicing event occurs to exon 10, creating a second gene, composed of exons 10 and 11. The spacing is perfect and there is a good Ur element in support of this. | Person_evidence | WBPerson71 | |||
| Feature_evidence | WBsf022341 | ||||
| [110419 pad] Created this alternative operon following personal communication from Tom Blumenthal. This Gene exhibits SL2 Trans-splicing at downstream exons in the gene. | Person_evidence | WBPerson71 | |||
| Curator_confirmed | WBPerson1983 | ||||
| [110419 pad] SL2 on exon 9 | Curator_confirmed | WBPerson1983 | |||
| [110419 pad] PolyA signal AATAAA | Curator_confirmed | WBPerson1983 |
