WormBase Schema for Model: Sequence
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?Sequence | DNA | UNIQUE | ?DNA | UNIQUE | Int | ||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | UNIQUE | Canonical_parent | UNIQUE | ?Sequence | XREF | Genomic_non_canonical | ||
Genomic_parent | UNIQUE | ?Sequence | XREF | Nongenomic | |||||
AGP_parent | UNIQUE | ?Sequence | XREF | AGP_fragment | |||||
S_child (15) | |||||||||
Structure | From | Source | UNIQUE | ?Sequence | XREF | Subsequence | |||
Source_exons | Int | UNIQUE | Int | ||||||
Subsequence | ?Sequence | XREF | Source | UNIQUE | Int | UNIQUE | Int | ||
Overlap_right | UNIQUE | ?Sequence | XREF | Overlap_left | UNIQUE | Int | |||
Overlap_left | UNIQUE | ?Sequence | XREF | Overlap_right | |||||
Gap_right | UNIQUE | Int | Text | ||||||
Clone_left_end | ?Clone | XREF | Clone_left_end | UNIQUE | Int | ||||
Clone_right_end | ?Clone | XREF | Clone_right_end | UNIQUE | Int | ||||
Flipped | |||||||||
DB_info (7) | |||||||||
Origin | From_database | UNIQUE | ?Database | UNIQUE | Int | ||||
From_author | ?Author | XREF | Sequence | ||||||
From_laboratory | UNIQUE | ?Laboratory | |||||||
Genetic_code | UNIQUE | ?Genetic_code | |||||||
Date | DateType | Text | |||||||
Date_directory | UNIQUE | Text | |||||||
Life_stage | UNIQUE | ?Life_stage | |||||||
Species | UNIQUE | ?Species | |||||||
Library | UNIQUE | ?Library | |||||||
Strain | UNIQUE | ?Strain | |||||||
Anatomy_term | ?Anatomy_term | ||||||||
Analysis | UNIQUE | ?Analysis | |||||||
Read_coverage | UNIQUE | Float | |||||||
Visible (15) | |||||||||
Properties | Genomic_canonical | Gene_count | UNIQUE | Int | |||||
Briggsae_canonical | |||||||||
Genomic | |||||||||
Checksum | MD5 | UNIQUE | Text | ||||||
CRC64 | UNIQUE | Text | |||||||
cDNA | cDNA_EST | ||||||||
EST_5 | |||||||||
EST_3 | |||||||||
Capped_5 | |||||||||
TSL_tag | |||||||||
EST_consensus | |||||||||
RNA | UNIQUE | mRNA | UNIQUE | Processed_mRNA | |||||
Unprocessed_mRNA | |||||||||
tRNA | Type | UNIQUE | Text | ||||||
Anticodon | UNIQUE | Text | |||||||
rRNA | UNIQUE | Text | |||||||
snRNA | UNIQUE | Text | |||||||
snoRNA | UNIQUE | Text | |||||||
scRNA | UNIQUE | Text | |||||||
miRNA | UNIQUE | Text | |||||||
ncRNA | UNIQUE | Text | |||||||
Ignore | #Evidence | ||||||||
Show_in_reverse_orientation | |||||||||
Status | Received | UNIQUE | DateType | ||||||
Library_construction | UNIQUE | DateType | |||||||
Shotgun | UNIQUE | DateType | |||||||
Shotgun_complete | UNIQUE | DateType | |||||||
Contiguous | UNIQUE | DateType | |||||||
Finished | UNIQUE | DateType | |||||||
Submitted | UNIQUE | DateType | |||||||
Annotated | UNIQUE | DateType | |||||||
Archived | UNIQUE | DateType | UNIQUE | Text | |||||
Match_type | UNIQUE | Match_with_function | |||||||
Match_without_function | |||||||||
Link | |||||||||
Splices (3) | |||||||||
Cluster_information | Contains_reads | ?Sequence | XREF | Contained_in_cluster | |||||
Contained_in_cluster | ?Sequence | XREF | Contains_reads | ||||||
Map | ?Map | XREF | Sequence | #Map_position | |||||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | |||||
Oligo | ?Oligo | XREF | In_sequence | Int | UNIQUE | Int | ?Method | ||
Defines_feature | ?Feature | XREF | Defined_by_sequence | #Evidence | |||||
Assembly_tags | Text | Int | Int | Text | |||||
Homol (4) | |||||||||
Method | UNIQUE | ?Method |