WormBase Schema for Model: Sequence
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?Sequence | DNA | UNIQUE | ?DNA | UNIQUE | Int | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | UNIQUE | Canonical_parent | UNIQUE | ?Sequence | XREF | Genomic_non_canonical | ||||
Genomic_parent | UNIQUE | ?Sequence | XREF | Nongenomic | |||||||
AGP_parent | UNIQUE | ?Sequence | XREF | AGP_fragment | |||||||
S_child | Gene_child | ?Gene | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||
CDS_child | ?CDS | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Transcript | ?Transcript | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Pseudogene | ?Pseudogene | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Transposon | ?Transposon | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Genomic_non_canonical | ?Sequence | XREF | Canonical_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Nongenomic | ?Sequence | XREF | Genomic_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
PCR_product | ?PCR_product | XREF | Canonical_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Operon | ?Operon | XREF | Canonical_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
AGP_fragment | ?Sequence | XREF | AGP_parent | Int | UNIQUE | Int | #SMap_info | ||||
Allele | ?Variation | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Oligo_set | ?Oligo_set | XREF | Canonical_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Feature_object | ?Feature | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Feature_data | ?Feature_data | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Homol_data | ?Homol_data | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||
Structure | From | Source | UNIQUE | ?Sequence | XREF | Subsequence | |||||
Source_exons | Int | UNIQUE | Int | ||||||||
Subsequence | ?Sequence | XREF | Source | UNIQUE | Int | UNIQUE | Int | ||||
Overlap_right | UNIQUE | ?Sequence | XREF | Overlap_left | UNIQUE | Int | |||||
Overlap_left | UNIQUE | ?Sequence | XREF | Overlap_right | |||||||
Gap_right | UNIQUE | Int | Text | ||||||||
Clone_left_end | ?Clone | XREF | Clone_left_end | UNIQUE | Int | ||||||
Clone_right_end | ?Clone | XREF | Clone_right_end | UNIQUE | Int | ||||||
Flipped | |||||||||||
DB_info | Database | ?Database | ?Database_field | ?Text | |||||||
Protein_id | ?Sequence | UNIQUE | Text | UNIQUE | Int | ||||||
Secondary_accession | ?Text | ||||||||||
DB_remark | ?Text | #Evidence | |||||||||
Keyword | ?Keyword | ||||||||||
DB_annotation | ?Database | UNIQUE | ?LongText | ||||||||
EMBL_dump_info | #EMBL_dump_info | ||||||||||
Origin | From_database | UNIQUE | ?Database | UNIQUE | Int | ||||||
From_author | ?Author | XREF | Sequence | ||||||||
From_laboratory | UNIQUE | ?Laboratory | |||||||||
Genetic_code | UNIQUE | ?Genetic_code | |||||||||
Date | DateType | Text | |||||||||
Date_directory | UNIQUE | Text | |||||||||
Life_stage | UNIQUE | ?Life_stage | |||||||||
Species | UNIQUE | ?Species | |||||||||
Library | UNIQUE | ?Library | |||||||||
Strain | UNIQUE | ?Strain | |||||||||
Anatomy_term | ?Anatomy_term | ||||||||||
Analysis | UNIQUE | ?Analysis | |||||||||
Read_coverage | UNIQUE | Float | |||||||||
Visible (15) | |||||||||||
Properties | Genomic_canonical | Gene_count | UNIQUE | Int | |||||||
Briggsae_canonical | |||||||||||
Genomic | |||||||||||
Checksum | MD5 | UNIQUE | Text | ||||||||
CRC64 | UNIQUE | Text | |||||||||
cDNA | cDNA_EST | ||||||||||
EST_5 | |||||||||||
EST_3 | |||||||||||
Capped_5 | |||||||||||
TSL_tag | |||||||||||
EST_consensus | |||||||||||
RNA | UNIQUE | mRNA | UNIQUE | Processed_mRNA | |||||||
Unprocessed_mRNA | |||||||||||
tRNA | Type | UNIQUE | Text | ||||||||
Anticodon | UNIQUE | Text | |||||||||
rRNA | UNIQUE | Text | |||||||||
snRNA | UNIQUE | Text | |||||||||
snoRNA | UNIQUE | Text | |||||||||
scRNA | UNIQUE | Text | |||||||||
miRNA | UNIQUE | Text | |||||||||
ncRNA | UNIQUE | Text | |||||||||
Ignore | #Evidence | ||||||||||
Show_in_reverse_orientation | |||||||||||
Status | Received | UNIQUE | DateType | ||||||||
Library_construction | UNIQUE | DateType | |||||||||
Shotgun | UNIQUE | DateType | |||||||||
Shotgun_complete | UNIQUE | DateType | |||||||||
Contiguous | UNIQUE | DateType | |||||||||
Finished | UNIQUE | DateType | |||||||||
Submitted | UNIQUE | DateType | |||||||||
Annotated | UNIQUE | DateType | |||||||||
Archived | UNIQUE | DateType | UNIQUE | Text | |||||||
Match_type | UNIQUE | Match_with_function | |||||||||
Match_without_function | |||||||||||
Link | |||||||||||
Splices | Confirmed_intron | Int | Int | #Splice_confirmation | |||||||
Predicted_5 | ?Method | Int | Int | UNIQUE | Float | ||||||
Predicted_3 | ?Method | Int | Int | UNIQUE | Float | ||||||
Cluster_information | Contains_reads | ?Sequence | XREF | Contained_in_cluster | |||||||
Contained_in_cluster | ?Sequence | XREF | Contains_reads | ||||||||
Map | ?Map | XREF | Sequence | #Map_position | |||||||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | |||||||
Oligo | ?Oligo | XREF | In_sequence | Int | UNIQUE | Int | ?Method | ||||
Defines_feature | ?Feature | XREF | Defined_by_sequence | #Evidence | |||||||
Assembly_tags | Text | Int | Int | Text | |||||||
Homol (4) | |||||||||||
Method | UNIQUE | ?Method |