WormBase Schema for Model: Gene
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?Gene | Evidence | #Evidence | ||||||
---|---|---|---|---|---|---|---|---|
SMap | S_parent | UNIQUE | Sequence | UNIQUE | ?Sequence | XREF | Gene_child | |
Identity (6) | ||||||||
Gene_info | Biotype | UNIQUE | ?SO_term | |||||
Gene_class | UNIQUE | ?Gene_class | XREF | Genes | ||||
Laboratory | ?Laboratory | |||||||
Cloned_by | #Evidence | |||||||
Reference_allele | ?Variation | #Evidence | ||||||
Allele | ?Variation | XREF | Gene | #Evidence | ||||
Possibly_affected_by | ?Variation | XREF | Possibly_affects | #Evidence | ||||
Legacy_information | Text | #Evidence | ||||||
Complementation_data | Text | |||||||
Strain | ?Strain | XREF | Gene | |||||
Component_of_genotype | ?Genotype | XREF | Gene | |||||
In_cluster | ?Gene_cluster | XREF | Contains_gene | |||||
RNASeq_FPKM | ?Life_stage | Float | #Evidence | |||||
GO_term | ?GO_term | XREF | Gene | ?GO_code | #Evidence | |||
GO_annotation | ?GO_annotation | XREF | Gene | |||||
Contained_in_operon | ?Operon | XREF | Contains_gene | |||||
Ortholog | ?Gene | XREF | Ortholog | ?Species | #Evidence | |||
Paralog | ?Gene | XREF | Paralog | ?Species | #Evidence | |||
Structured_description | Provisional_description | ?Text | #Evidence | |||||
Detailed_description | ?Text | #Evidence | ||||||
Concise_description | ?Text | #Evidence | ||||||
Other_description | ?Text | #Evidence | ||||||
Automated_description | ?Text | #Evidence | ||||||
Sequence_features | ?Text | #Evidence | ||||||
Functional_pathway | ?Text | #Evidence | ||||||
Functional_physical_interaction | ?Text | #Evidence | ||||||
Biological_process | ?Text | #Evidence | ||||||
Molecular_function | ?Text | #Evidence | ||||||
Expression | ?Text | #Evidence | ||||||
Disease_info (3) | ||||||||
Modifies_disease | ?DO_term | XREF | Disease_modifier_gene | |||||
Models_disease_in_annotation | ?Disease_model_annotation | XREF | Disease_relevant_gene | |||||
Modifies_disease_in_annotation | ?Disease_model_annotation | XREF | Modifier_gene | |||||
Models_disease_asserted | ?Disease_model_annotation | XREF | Asserted_gene | |||||
Models_disease_inferred | ?Disease_model_annotation | XREF | Inferred_gene | |||||
Molecular_info | Corresponding_CDS | ?CDS | XREF | Gene | #Evidence | |||
Corresponding_CDS_history | ?CDS | XREF | Gene_history | |||||
Corresponding_transcript | ?Transcript | XREF | Gene | #Evidence | ||||
Corresponding_transcript_history | ?Transcript | XREF | Gene_history | |||||
Corresponding_pseudogene | ?Pseudogene | XREF | Gene | #Evidence | ||||
Corresponding_pseudogene_history | ?Pseudogene | XREF | Gene_history | |||||
Corresponding_transposon | ?Transposon | XREF | Gene | #Evidence | ||||
Other_sequence | ?Sequence | XREF | Gene | #Evidence | ||||
Associated_feature | ?Feature | XREF | Associated_with_gene | #Evidence | ||||
Associated_transcription_factor | ?Transcription_factor | XREF | Associated_with_gene | #Evidence | ||||
Gene_product_binds | ?Feature | XREF | Bound_by_product_of | |||||
Transcription_factor | ?Transcription_factor | XREF | Product_of | |||||
Experimental_info (14) | ||||||||
Map_info | Map | UNIQUE | ?Map | XREF | Gene | #Map_position | ||
Well_ordered | ||||||||
Hide_under | ?Gene | XREF | Representative_for | |||||
Representative_for | ?Gene | XREF | Hide_under | |||||
Positive | Inside_rearr | ?Rearrangement | XREF | Gene_inside | #Evidence | |||
Positive_clone | ?Clone | XREF | Positive_gene | #Evidence | ||||
Negative | Outside_rearr | ?Rearrangement | XREF | Gene_outside | #Evidence | |||
Negative_clone | ?Clone | XREF | Negative_gene | #Evidence | ||||
Mapping_data | 2_point | ?2_point_data | ||||||
Multi_point | ?Multi_pt_data | |||||||
Pos_neg_data | ?Pos_neg_data | |||||||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | ||||
Landmark_gene | ||||||||
Pseudo_map_position | ||||||||
Reference | ?Paper | XREF | Gene | #Evidence | ||||
Picture | ?Picture | XREF | Gene | |||||
Remark | ?Text | #Evidence | ||||||
Method | UNIQUE | ?Method |