WormBase Tree Display for Gene: WBGene00219702
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| WBGene00219702 | SMap | S_parent | Sequence | F54H5 | ||||
|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | ||||||
| Name | CGC_name | linc-138 | Person_evidence | WBPerson6396 | ||||
| Sequence_name | F54H5.13 | |||||||
| Molecular_name | F54H5.13 | |||||||
| Other_name | CELE_F54H5.13 | Accession_evidence | NDB | BX284602 | ||||
| Public_name | linc-138 | |||||||
| DB_info | Database | NDB | locus_tag | CELE_F54H5.13 | ||||
| NCBI | gene | 24104635 | ||||||
| RefSeq | protein | NR_101702.1 | ||||||
| RNAcentral | URSid | URS0000129081 | ||||||
| Species | Caenorhabditis elegans | |||||||
| History | Version_change | 1 | 13 Aug 2012 10:25:35 | WBPerson1983 | Event | Created | ||
| Status | Live | |||||||
| Gene_info | Biotype | SO:0001641 | ||||||
| Gene_class | linc | |||||||
| Allele (21) | ||||||||
| RNASeq_FPKM (74) | ||||||||
| Structured_description | Automated_description | Is affected by several genes including tph-1; mrps-5; and etr-1 based on RNA-seq studies. Is affected by paraquat based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||
| Curator_confirmed | WBPerson324 | |||||||
| WBPerson37462 | ||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||
| Molecular_info | Corresponding_transcript | F54H5.13 | ||||||
| Experimental_info | Expression_cluster | WBPaper00057068:ints-4(RNAi)_upregulated | ||||||
| WBPaper00059117:B.subtilis_upregulated | ||||||||
| WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA | ||||||||
| WBPaper00059754:C.neoformans_H99_upregulated | ||||||||
| WBPaper00060445:nfki-1(cer1)_upregulated_L4 | ||||||||
| WBPaper00060921:tph-1(mg280)_upregulated | ||||||||
| WBPaper00062325:muscle_depleted_noncoding-RNA | ||||||||
| WBPaper00064716:paraquat_downregulated | ||||||||
| WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2 | ||||||||
| Map_info | Map | II | Position | -0.060391 | ||||
| Positive | Positive_clone | F54H5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Pseudo_map_position | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
| Method | Gene |
