WormBase Tree Display for Gene: WBGene00177505

WBGene00177505 SMap: S_parent: Sequence: Cjap.Contig17970
  Identity: Version: 3
    Name: CGC_name: Cjp-rnt-1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA21933
      Molecular_name: CJA21933a
        CJA21933a.1
        JA55711
        CJA21933b
        JA59274
        CJA21933b.1
      Public_name: Cjp-rnt-1
    Species: Caenorhabditis japonica
    History: Version_change: 1 22 Jan 2009 15:16:36 WBPerson4055 Event: Imported: from WASHU
        2 27 Jan 2009 12:59:26 WBPerson4055 Name_change: CGC_name: Cjp-rnt-1
        3 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rnt
    RNASeq_FPKM: WBls:0000004 7.77127 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 6.91695 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 2.73128 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        3.04238 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        3.35347 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 0.873913 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        1.18023 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        1.65422 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        1.74002 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        1.75008 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        1.77277 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        1.79546 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        1.96254 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        2.01829 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        2.68543 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
      WBls:0000101 1.96254 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        2.6687 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00223995
      00223996
      00223997
      00223998
    Ortholog: WBGene00004393 Caenorhabditis elegans From_analysis: Inparanoid_8
      WBGene00026814 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00066598 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00155187 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00159354 Caenorhabditis brenneri From_analysis: Inparanoid_8
      CSP39.g27250 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19851 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Csp5_scaffold_00851.g16090 Caenorhabditis sinica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity and DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans rnt-1. In C. elegans, rnt-1 is involved in several processes, including nematode male tail tip morphogenesis; positive regulation of locomotion involved in locomotory behavior; and regulation of gene expression. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA21933a
      CJA21933b
    Corresponding_transcript: CJA21933a.1
      CJA21933b.1
    Other_sequence: Dviv_isotig33381
      Dviv_isotig33320
  Experimental_info: Expr_pattern: Expr1083452
    Microarray_results: GPL14145_CJA21933_100-159_0.868_7_A
      GPL14145_CJA21933_211-270_0.437_61_B
      GPL14145_CJA21933_273-332_0.941_1_C
  Method: Gene