WormBase Tree Display for Gene: WBGene00160088

WBGene00160088 SMap: S_parent: Sequence: Cbre_Contig108
  Identity: Version: 1
    Name: CGC_name: Cbn-cdd-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBN21363
      Molecular_name: CBN21363
        CBN21363.1
        CN24728
      Other_name: CBN21363
      Public_name: Cbn-cdd-1
    Species: Caenorhabditis brenneri
    History: Version_change: 1 30 Oct 2008 10:39:29 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cbn-cdd-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cdd
    RNASeq_FPKM: WBls:0000002 11.2165 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
        18.5437 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
        4.29196 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        5.12203 From_analysis: RNASeq.brenneri.WBls:0000002.control_median
        5.39928 From_analysis: RNASeq.brenneri.WBls:0000002.control_mean
        5.9521 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
        6.00369 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
        7.9849 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
      WBls:0000004 0.69962 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        1.39924 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
      WBls:0000024 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        57.6339 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        65.1573 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        66.8722 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        84.2678 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        89.6357 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
      WBls:0000038 7.29854 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        7.39698 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        7.49541 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (13)
      WBls:0000101 10.9228 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
        5.587 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
    GO_annotation: 00219482
    Ortholog (30)
    Paralog: WBGene00191424 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00193558 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable catalytic activity. Is an ortholog of C. elegans cdd-1. In C. elegans, cdd-1 is involved in RNA modification; deoxycytidine catabolic process; and uridine biosynthetic process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN21363
    Corresponding_transcript: CBN21363.1
    Other_sequence: CBC05752_1
      Acan_isotig16673
      HCC12438_1
      HC09702
      GPC03179_1
      Name_isotig03684
      GP02112
  Experimental_info: Microarray_results: GPL14142_CBN21363_2-61_0.897_10_C
      GPL14142_CBN21363_87-146_0.930_6_A
      GPL14142_CBN21363_260-319_0.952_1_B
  Method: Gene