WormBase Tree Display for Gene: WBGene00141894

WBGene00141894 SMap: S_parent: Sequence: Cbre_Contig30
  Identity: Version: 1
    Name: CGC_name: Cbn-hlh-8 From_analysis: Inferred_from_orthology
      Sequence_name: CBN03169
      Molecular_name: CBN03169
        CBN03169.1
        CN08500
      Other_name: CBN03169
      Public_name: Cbn-hlh-8
    Species: Caenorhabditis brenneri
    History: Version_change: 1 30 Oct 2008 10:39:29 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cbn-hlh-8
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hlh
    RNASeq_FPKM: WBls:0000002 0.102054 From_analysis: RNASeq.brenneri.WBls:0000002.control_mean
        1.02054 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
            RNASeq.brenneri.WBls:0000002.control_median
      WBls:0000004 0.639695 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        1.27939 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
      WBls:0000024 0.938583 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        1.04075 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        1.35785 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        2.51973 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        3.37791 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
      WBls:0000038 2.28012 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        4.46773 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        6.65535 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (12)
      WBls:0000101 1.37413 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
    GO_annotation: 00204670
    Ortholog (26)
    Paralog: WBGene00144003 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00163325 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00143208 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00164249 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00160554 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00145499 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00146286 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00148587 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00159211 Caenorhabditis brenneri From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable protein dimerization activity. Is an ortholog of C. elegans hlh-8. In C. elegans, hlh-8 is involved in mesodermal cell fate specification; positive regulation of transcription by RNA polymerase II; and vulval cell fate specification. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN03169
    Corresponding_transcript: CBN03169.1
    Other_sequence: TM01482
      EX545861.1
      TMC01147_1
      Oden_isotig22148
      ES413014.1
      JI213846.1
      ACC17623_1
      Dviv_isotig27720
  Experimental_info: Microarray_results: GPL14142_CBN03169_154-213_0.941_6_A
      GPL14142_CBN03169_259-318_0.943_5_B
      GPL14142_CBN03169_484-543_0.969_1_C
  Method: Gene