WormBase Tree Display for Gene: WBGene00133580

WBGene00133580 SMap: S_parent: Sequence: Cjap.Contig18053
  Identity: Version: 3
    Name: CGC_name: Cjp-crn-5 From_analysis: Inferred_from_orthology
      Sequence_name: CJA14376
      Molecular_name: CJA14376
        CJA14376.1
        JA36749
      Public_name: Cjp-crn-5
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:22 WBPerson4055 Event: Imported: NGASP import
        2 27 Jan 2009 12:59:25 WBPerson4055 Name_change: CGC_name: Cjp-crn-5
        3 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: crn
    RNASeq_FPKM: WBls:0000004 26.8119 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 25.3406 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 14.8376 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        18.6865 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        22.5354 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 11.437 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        14.3474 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        15.3187 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        17.3032 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        19.2878 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        22.438 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        29.8212 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        40.6077 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        40.8201 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        7.86435 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
      WBls:0000101 19.2878 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        20.6946 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    Ortholog (28)
    Paralog: WBGene00122514 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Exoribonuclease, PH domain 2 superfamily; PNPase/RNase PH domain superfamily; 3' exoribonuclease family, domain 1; Exoribonuclease, phosphorolytic domain 1; and Ribosomal protein S5 domain 2-type fold. Is an ortholog of C. elegans crn-5. In C. elegans, crn-5 is involved in RNA processing and apoptotic DNA fragmentation. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA14376
    Corresponding_transcript: CJA14376.1
    Other_sequence: CJC05327_1
      CGC00890_1
      CBC01241_1
  Experimental_info: Expr_pattern: Expr1091750
    Microarray_results: GPL14145_CJA14376_293-352_0.787_31_A
      GPL14145_CJA14376_398-457_0.947_1_B
      GPL14145_CJA14376_569-628_0.941_2_C
  Method: Gene