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WormBase Tree Display for Gene: WBGene00123438

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Name Class

WBGene00123438SMapS_parentSequenceCjap.Contig18037
IdentityVersion2
NameCGC_nameCjp-tph-1From_analysisInferred_from_orthology
Sequence_nameCJA04234
Molecular_nameCJA04234
CJA04234.1
JA57143
Public_nameCjp-tph-1
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:20WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-tph-1
229 Jul 2011 11:13:37WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtph
RNASeq_FPKMWBls:00000040.535886From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000271.92359From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.26047From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.429133From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
0.597796From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.159383From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.316809From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.34327From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.42396From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.679334From_analysisRNASeq.japonica.WBls:0000041.control_median
0.864361From_analysisRNASeq.japonica.WBls:0000041.control_mean
0.934708From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.35563From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1.56171From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.81942From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
WBls:00001010.535886From_analysisRNASeq.japonica.total_over_all_stages.control_median
0.787126From_analysisRNASeq.japonica.total_over_all_stages.control_mean
GO_annotation00190062
00190063
00190064
00190065
Ortholog (29)
ParalogWBGene00134020Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00133971Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable iron ion binding activity and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen. Predicted to be involved in aromatic amino acid metabolic process. Is an ortholog of C. elegans tph-1. In C. elegans, tph-1 is involved in several processes, including determination of adult lifespan; locomotory exploration behavior; and positive regulation of transforming growth factor beta receptor signaling pathway.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA04234
Corresponding_transcriptCJA04234.1
Other_sequence (18)
Experimental_infoExpr_patternExpr1086797
Microarray_resultsGPL14145_CJA04234_1240-1299_0.918_9_C
GPL14145_CJA04234_1295-1354_0.940_3_B
GPL14145_CJA04234_1523-1582_0.934_4_A
MethodGene