WormBase Tree Display for Gene: WBGene00122481

WBGene00122481 SMap: S_parent: Sequence: Cjap.Contig17842
  Identity: Version: 2
    Name: CGC_name: Cjp-lin-48 From_analysis: Inferred_from_orthology
      Sequence_name: CJA03277
      Molecular_name: CJA03277a
        CJA03277a.1
        JA43472
        CJA03277b
        JA50189
        CJA03277b.1
      Public_name: Cjp-lin-48
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:20 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-lin-48
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lin
    RNASeq_FPKM: WBls:0000004 1.54464 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 2.56105 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 1.65112 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        2.5991 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        3.54707 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 1.57497 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        1.58142 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        1.78283 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        1.96546 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        2.00739 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        2.04931 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        2.26516 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        2.47393 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        3.00389 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        3.68944 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
      WBls:0000101 1.96546 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        2.10963 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    Ortholog (31)
    Paralog: WBGene00213451 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00120901 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00136450 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Zinc finger C2H2 superfamily; Zinc finger, C2H2 type; Ovo-like; and Zinc finger C2H2-type. Is an ortholog of C. elegans lin-48. In C. elegans, lin-48 is involved in anatomical structure morphogenesis and response to salt stress. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA03277a
      CJA03277b
    Corresponding_transcript: CJA03277a.1
      CJA03277b.1
    Other_sequence: ASC34119_1
      JI464714.1
      FC544505.1
      FE919838.1
      Acan_isotig16461
      MCC04840_1
      Oden_isotig21469
      MC04592
      ACC27991_1
      FE920172.1
  Experimental_info: Microarray_results: GPL14145_CJA03277_326-385_0.583_114_B
      GPL14145_CJA03277_522-581_0.921_7_A
  Method: Gene