WormBase Tree Display for Gene: WBGene00122135

WBGene00122135 SMap: S_parent: Sequence: Cjap.Contig1016
  Identity: Version: 3
    Name: CGC_name: Cjp-sqv-6 From_analysis: Inferred_from_orthology
      Sequence_name: CJA02931
      Molecular_name: CJA02931a
        CJA02931a.1
        JA67442
        CJA02931b
        JA48458
        CJA02931b.1
      Public_name: Cjp-sqv-6
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:20 WBPerson4055 Event: Imported: NGASP import
        2 27 Jan 2009 12:59:23 WBPerson4055 Name_change: CGC_name: Cjp-sqv-6
        3 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sqv
    RNASeq_FPKM: WBls:0000004 11.0361 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 10.8836 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 10.5952 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        12.9443 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        8.24604 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 17.2445 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        19.4118 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        30.6716 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        3.30355 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        3.3197 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        33.5111 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        35.9123 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        3.68385 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        3.81735 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        41.0748 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
      WBls:0000101 10.8836 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        15.2619 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00188966
      00188967
      00188968
      00188969
    Ortholog (77)
    Paralog: WBGene00119263 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00120460 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00121553 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00122324 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00134880 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00125906 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00134368 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00206738 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00217530 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable protein xylosyltransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to be located in membrane. Is an ortholog of C. elegans sqv-6. In C. elegans, sqv-6 is involved in several processes, including UDP-D-xylose metabolic process; egg-laying behavior; and glycosaminoglycan biosynthetic process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA02931a
      CJA02931b
    Corresponding_transcript: CJA02931a.1
      CJA02931b.1
    Other_sequence (37)
  Experimental_info: Expr_pattern: Expr1081498
    Microarray_results: GPL14145_CJA02931_157-216_0.890_26_A
      GPL14145_CJA02931_449-508_0.943_3_B
      GPL14145_CJA02931_548-607_0.952_1_C
  Method: Gene