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WormBase Tree Display for Gene: WBGene00121389

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Name Class

WBGene00121389SMapS_parentSequenceCjap.Contig18199
IdentityVersion2
NameCGC_nameCjp-lin-10From_analysisInferred_from_orthology
Sequence_nameCJA02184
Molecular_nameCJA02184a
CJA02184a.1
JA47986
CJA02184b
JA43709
CJA02184b.1
Public_nameCjp-lin-10
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:20WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-lin-10
229 Jul 2011 11:13:37WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
RNASeq_FPKMWBls:000000446.252From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002727.6664From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003814.0668From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
15.0182From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
15.9695From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004112.6835From_analysisRNASeq.japonica.WBls:0000041.control_median
12.7942From_analysisRNASeq.japonica.WBls:0000041.control_mean
16.2653From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
17.7811From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
18.1551From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
23.106From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
5.85076From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
5.99724From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
6.09682From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
9.10166From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
WBls:000010115.8699From_analysisRNASeq.japonica.total_over_all_stages.control_mean
15.9695From_analysisRNASeq.japonica.total_over_all_stages.control_median
Ortholog (27)
ParalogWBGene00216102Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00214612Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: PH-like domain superfamily; Phosphotyrosine interaction domain (PTB/PID); PTB/PI domain; PDZ superfamily; and PDZ domain. Is an ortholog of C. elegans lin-10. In C. elegans, lin-10 is involved in several processes, including neuron-neuron synaptic transmission; positive regulation of backward locomotion; and protein localization.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA02184a
CJA02184b
Corresponding_transcriptCJA02184a.1
CJA02184b.1
Other_sequence (61)
Experimental_infoExpr_patternExpr1071810
Microarray_resultsGPL14145_CJA02184_3130-3189_0.882_23_C
GPL14145_CJA02184_3201-3260_0.940_1_A
GPL14145_CJA02184_3294-3353_0.866_37_B
MethodGene