WormBase Tree Display for Gene: WBGene00112087
expand all nodes | collapse all nodes | view schema
| WBGene00112087 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-gut-2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA22533 | ||||||||
| Molecular_name | PPA22533 | ||||||||
| PPA22533.1 | |||||||||
| PP68667 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000079278 | ||||||||
| UMM-S196-6.1 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-gut-2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Feb 2019 15:42:30 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 3 | 08 May 2019 10:09:26 | WBPerson1983 | Name_change | CGC_name | Ppa-gut-2 | ||||
| 4 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-gut-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gut | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 16.6325 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 5.54417 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00183462 | ||||||||
| 00183463 | |||||||||
| 00183464 | |||||||||
| 00183465 | |||||||||
| Ortholog (27) | |||||||||
| Structured_description | Automated_description | Predicted to enable nucleic acid binding activity and tRNA-intron endonuclease activity. Predicted to be involved in mRNA processing and tRNA splicing, via endonucleolytic cleavage and ligation. Is an ortholog of C. elegans gut-2. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA22533 | |||||||
| Corresponding_transcript | PPA22533.1 | ||||||||
| Other_sequence (57) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_51032 | |||||||
| GPL14372_Probes_51033 | |||||||||
| GPL14372_Probes_51034 | |||||||||
| GPL14372_Probes_51036 | |||||||||
| GPL14372_Probes_51038 | |||||||||
| GPL14372_Probes_51039 | |||||||||
| GPL14372_Probes_51040 | |||||||||
| GPL14372_Probes_51041 | |||||||||
| GPL14372_Probes_51042 | |||||||||
| GPL14372_Probes_51044 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-gut-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-gut-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
