WormBase Tree Display for Gene: WBGene00105535
expand all nodes | collapse all nodes | view schema
| WBGene00105535 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 9 | |||||||
| Name | CGC_name | Ppa-ldb-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA15981 | ||||||||
| Molecular_name | PPA15981 | ||||||||
| PPA15981.1 | |||||||||
| PP69496 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000072706 | ||||||||
| GENEPREDICTION_SNAP300000072707 | |||||||||
| GENEPREDICTION_SNAP300000072708 | |||||||||
| UMM-S250-1.4 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-ldb-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 17 Nov 2017 15:19:42 | WBPerson4055 | Name_change | CGC_name | Ppa-ldb-1 | ||||
| 3 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00105536 | ||||
| 4 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00105537 | ||||
| 5 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00202627 | ||||
| 6 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 08 May 2019 10:09:24 | WBPerson1983 | Name_change | CGC_name | Ppa-ldb-1 | ||||
| 8 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 9 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-ldb-1 | ||||
| Acquires_merge | WBGene00105536 | ||||||||
| WBGene00105537 | |||||||||
| WBGene00202627 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ldb | ||||||||
| RNASeq_FPKM | WBls:0000032 | 25.3051 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 11.5 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 9.19497 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog (27) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: LIM-domain binding protein; LIM interaction domain; LIM interaction domain (LID); and LIM-domain binding protein/SEUSS. Is an ortholog of C. elegans ldb-1. In C. elegans, ldb-1 is involved in several processes, including mechanosensory behavior; positive regulation of vulval development; and regulation of transcription by RNA polymerase II. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA15981 | |||||||
| Corresponding_transcript | PPA15981.1 | ||||||||
| Other_sequence | JI179508.1 | ||||||||
| AYC03536_1 | |||||||||
| Dviv_isotig25892 | |||||||||
| JI169597.1 | |||||||||
| PPC16953_1 | |||||||||
| FG352924.1 | |||||||||
| AE02789 | |||||||||
| JI167399.1 | |||||||||
| FG349957.1 | |||||||||
| Experimental_info | Microarray_results (16) | ||||||||
| Remark | [190208 pad] The CGC name Ppa-ldb-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-ldb-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
