WormBase Tree Display for Gene: WBGene00104171
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| WBGene00104171 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | Ppa-sax-3 | Inferred_automatically | from gene merge | |||||
| Sequence_name | PPA14617 | ||||||||
| Molecular_name | PPA14617 | ||||||||
| PPA14617.1 | |||||||||
| PP62446 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000071096 | ||||||||
| GENEPREDICTION_SNAP300000071097 | |||||||||
| UMM-S293-9.84 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-sax-3 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 17 Nov 2017 15:19:42 | WBPerson4055 | Name_change | CGC_name | Ppa-sax-3 | ||||
| 3 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00104172 | ||||
| Acquires_merge | WBGene00104172 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sax | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0.921352 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.921352 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 1.75785 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 4.35221 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog (34) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; Immunoglobulin I-set domain; Immunoglobulin I-set; Fibronectin type III; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Fibronectin type III domain; Immunoglobulin V-set domain; and Immunoglobulin subtype. Is an ortholog of C. elegans sax-3. In C. elegans, sax-3 is involved in generation of neurons and regulation of sensory neuron axon guidance. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA14617 | |||||||
| Corresponding_transcript | PPA14617.1 | ||||||||
| Other_sequence (34) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_15952 | |||||||
| GPL14372_Probes_15953 | |||||||||
| GPL14372_Probes_15955 | |||||||||
| GPL14372_Probes_15956 | |||||||||
| GPL14372_Probes_15957 | |||||||||
| GPL14372_Probes_64936 | |||||||||
| Method | Gene |
