WormBase Tree Display for Gene: WBGene00079936

WBGene00079936 SMap: S_parent: Sequence: Crem_Contig16
  Identity: Version: 2
    Name: CGC_name: Cre-lin-53 From_analysis: Inferred_from_orthology
      Sequence_name: CRE08167
      Molecular_name: CRE08167
        CRE08167.1
        RP29857
      Public_name: Cre-lin-53
    Species: Caenorhabditis remanei
    History: Version_change: 1 03 Jul 2008 11:46:53 WBPerson4055 Event: Created
        2 04 Jul 2008 11:06:47 WBPerson4055 Name_change: CGC_name: Cre-lin-53
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lin
    RNASeq_FPKM: WBls:0000004 408.777 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        415.026 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        421.276 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 107.316 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        119.789 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        125.516 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        131.243 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        149.42 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        28.8108 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 23.8296 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        43.2707 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        52.6101 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        53.3725 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 150.236 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        160.032 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        265.561 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        296.764 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        297.773 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        30.3575 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        34.8261 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        34.9117 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 (12)
      WBls:0000101 115.577 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
        65.5414 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
    Ortholog (36)
    Paralog: WBGene00079812 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00062265 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00071933 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: WD domain, G-beta repeat; Histone-binding protein RBBP4, N-terminal; WD40-repeat-containing domain superfamily; G-protein beta WD-40 repeat; WD40/YVTN repeat-like-containing domain superfamily; WD40 repeat; and Histone-binding protein RBBP4 or subunit C of CAF1 complex. Is an ortholog of C. elegans lin-53. In C. elegans, lin-53 is involved in several processes, including cell fate specification; embryonic digestive tract morphogenesis; and nematode male tail tip morphogenesis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE08167
    Corresponding_transcript: CRE08167.1
    Other_sequence (133)
  Experimental_info: Expr_pattern: Expr1102840
    Microarray_results: GPL14146_CRE08167_521-580_0.898_11_C
      GPL14146_CRE08167_578-637_0.879_15_A
      GPL14146_CRE08167_610-669_0.916_4_B
  Method: Gene